Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0538X.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 33 0.018
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.22
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 27 1.6
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 27 1.6
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 26 2.7
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 3.6
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 25 6.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 6.3
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 8.4
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 25 8.4
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 33.5 bits (73), Expect = 0.018
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 369 LVLIFMISVFGVKNHGNIVFVIMLTLLQGLCG-MCFGFVI 485
+V +F I++FGVK +G + F++ + +CG + G +I
Sbjct: 203 IVFLFFINIFGVKGYGEMEFIMSTIKVVAMCGFIILGIII 242
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.9 bits (64), Expect = 0.22
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -3
Query: 491 GRYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDL 312
G++H+ + HA ++S EDD D ++HE + + R HHE G+ + +
Sbjct: 154 GKHHKGK-HAKGKGKKSHPKPEDDSVFFDDERPKHHEFDDEDREFPAHHEPGEHMPPPPM 212
Query: 311 SGRHSRH 291
+ H
Sbjct: 213 HHKPGEH 219
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 89 LLETCDYNPKLGDIPIDFMDPIYGNKNPSFTDFVAPGVILTIV 217
L+ T N +L + PIDF +YG K D GV + +V
Sbjct: 365 LVLTATTNTELLEEPIDFWSDVYGFKMNGMKDASYKGVSVQVV 407
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 104 DYNPKLGDIPIDFMDPIYGNKNPSFTDFV 190
++N +G++PI F+D +YG D +
Sbjct: 196 EHNYTIGEVPIAFVDRLYGESKLGMDDIL 224
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 2 QIWLDMSNQQIGLMLNRDIQFSYRDFAK 85
Q+W+D I L NR Q SY DF +
Sbjct: 135 QLWIDRIEPIIKLYPNRFSQVSYEDFLR 162
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 3.6
Identities = 17/78 (21%), Positives = 32/78 (41%)
Frame = -3
Query: 485 YHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSG 306
++EPE H ++S+H+ + + + H + S ++GD+ E LS
Sbjct: 191 HNEPEYHTESKNEESEHNTKS---IREEPIHHVDSKNEEPVYSKIPEKMGDEFSENSLSK 247
Query: 305 RHSRHPGSVQETLHPSTS 252
S +HP+ S
Sbjct: 248 SDSAVKQEGNLLIHPNNS 265
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 329 VREQDLSGRHSRHPGSVQETLHPSTSTL 246
+ E ++ G+H P ET P+ STL
Sbjct: 254 LNESEIEGQHVEEPALPSETSVPANSTL 281
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 6.3
Identities = 16/66 (24%), Positives = 24/66 (36%)
Frame = -3
Query: 353 HHHELGDDVREQDLSGRHSRHPGSVQETLHPSTSTLTMSGPXXXXXXXXXXXXXXRSL*T 174
H ++ G+ +SG H H + HP T L + P SL T
Sbjct: 309 HVYDNGNITSIVAVSGTHGTHVAGIIGANHPETPELNGAAPGCQLVSLMIGDGRLDSLET 368
Query: 173 KGSYSR 156
++SR
Sbjct: 369 SHAFSR 374
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 347 HELGDDVREQDLSGRHSRHPGSVQETLHPSTSTL 246
H + D+R SGR S +P ++ T TL
Sbjct: 346 HTVSTDIRSSPFSGRPSDNPSTLISTADADNITL 379
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 369 LVLIFMISVFGVKNHGNIVFVIML 440
LV++ I++FGV+ G + FV+ L
Sbjct: 197 LVVVIGINLFGVRVFGEVEFVLAL 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,378
Number of Sequences: 5004
Number of extensions: 41118
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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