Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0538X.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-12|AAK68400.1| 189|Caenorhabditis elegans Sr protein (sp... 32 0.27
U23523-8|AAC46563.1| 87|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 25 0.61
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical pr... 30 1.1
AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. 30 1.1
U28971-2|AAA68377.1| 180|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF016687-3|AAC48090.1| 375|Caenorhabditis elegans Paralysed arr... 29 1.9
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 2.5
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.5
Z73906-7|CAA98119.2| 428|Caenorhabditis elegans Hypothetical pr... 28 3.3
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 28 3.3
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 28 4.3
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 28 4.3
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 28 4.3
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 28 4.3
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 27 5.7
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 27 5.7
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 27 5.7
AF040642-4|AAN73873.2| 319|Caenorhabditis elegans Hypothetical ... 27 5.7
Z77655-6|CAB01139.1| 351|Caenorhabditis elegans Hypothetical pr... 27 7.6
U75587-1|AAB48299.1| 351|Caenorhabditis elegans caveolin-2 prot... 27 7.6
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 27 7.6
AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical... 27 7.6
AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical... 27 7.6
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 27 7.6
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 27 10.0
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 27 10.0
>U28738-12|AAK68400.1| 189|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform c protein.
Length = 189
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 473 EAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDE 375
E HAA T+ H DDVP +LD H H+++
Sbjct: 28 ENHAAMTVMDRDH--HDDVPALLDVVHVLHQED 58
>U23523-8|AAC46563.1| 87|Caenorhabditis elegans Hypothetical
protein F53A9.8 protein.
Length = 87
Score = 31.5 bits (68), Expect = 0.35
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 398 EHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPGSVQETLH 264
EH + + +H HHHE D E G H H G +T H
Sbjct: 5 EHGHGDGDHHDHHDEHHHE---DHHEHGADGEHVHHAGDHCDTQH 46
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 404 DAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGRH--SRHPGSVQETLH 264
D +H H DEH HHE G D +G H ++H G+ Q H
Sbjct: 10 DGDHHDHHDEHHHE---DHHEHGADGEHVHHAGDHCDTQHGGNHQAGEH 55
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = -3
Query: 440 QHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDD-VREQDLSG-RHSRHPGSVQETL 267
+H +ED D EH +H +H +H+ G+ + Q G H +H +
Sbjct: 19 EHHHEDHHEHGADGEHVHHAGDHCDTQHGGNHQAGEHCAKTQHQDGEHHEQHHDAHDSHA 78
Query: 266 HPS 258
H S
Sbjct: 79 HDS 81
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 24.6 bits (51), Expect(2) = 0.61
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = -3
Query: 428 EDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDV 327
E P L + EH + L HHH DV
Sbjct: 488 EHGAPPPLSPVFEMKKHEHHKHLDQHHHHKHQDV 521
Score = 24.6 bits (51), Expect(2) = 0.61
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 353 HHHELGDDVREQDLSGRHSRHPGSVQETLHPSTSTLT 243
HHH D D+ R S V+ H TST++
Sbjct: 550 HHHHHHDHENRNDVPSRPSSVANYVKHQPHSRTSTVS 586
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 309
R + AQ Q+Q + P + H +EH+RRL H + R Q+
Sbjct: 673 RQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQE-- 730
Query: 308 GRHSRHPGSVQETLHPS 258
SR Q LH S
Sbjct: 731 -EESRARALQQSLLHAS 746
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -3
Query: 482 HEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGR 303
H + H AQ Q SQ +E EHR +EH+RR HH ++ +
Sbjct: 691 HHSQQHPAQPAQPSQDHHE---------EHRRRLEEHRRR-EEEHHRRQEEESRARALQQ 740
Query: 302 HSRHPGSVQET 270
H V+ T
Sbjct: 741 SLLHASQVEST 751
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 309
R + AQ Q+Q + P + H +EH+RRL H + R Q+
Sbjct: 673 RQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQE-- 730
Query: 308 GRHSRHPGSVQETLHPS 258
SR Q LH S
Sbjct: 731 -EESRARALQQSLLHAS 746
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -3
Query: 482 HEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGR 303
H + H AQ Q SQ +E EHR +EH+RR HH ++ +
Sbjct: 691 HHSQQHPAQPAQPSQDHHE---------EHRRRLEEHRRR-EEEHHRRQEEESRARALQQ 740
Query: 302 HSRHPGSVQET 270
H V+ T
Sbjct: 741 SLLHASQVEST 751
>Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical
protein K10D3.2 protein.
Length = 665
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 409 FLTPNTDIMKMSTSAVCPHITTNWVTTCENRISPGDTPATQDRSR 275
F NT ++ STS P +TN V+ C +R G + + + R
Sbjct: 285 FFKSNTQLLTSSTSKTAPQTSTNIVSNCIDRRISGISASANEACR 329
>AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein.
Length = 665
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 409 FLTPNTDIMKMSTSAVCPHITTNWVTTCENRISPGDTPATQDRSR 275
F NT ++ STS P +TN V+ C +R G + + + R
Sbjct: 285 FFKSNTQLLTSSTSKTAPQTSTNIVSNCIDRRISGISASANEACR 329
>U28971-2|AAA68377.1| 180|Caenorhabditis elegans Hypothetical
protein B0244.9 protein.
Length = 180
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 288 WVAGVSPGEILFSHVVTQFVVMCGQTALVLIFMISVFGVKNH-GNIVFVIMLTLLQGL 458
W A P EIL + V T+F +M G + ++I +S++ H ++++ TL GL
Sbjct: 35 WAA--EPDEILIAGVPTKF-IMFGLSCFLVILTLSLWIASTHYSYFIWLVFATLYMGL 89
>AF016687-3|AAC48090.1| 375|Caenorhabditis elegans Paralysed arrest
at two-fold protein6 protein.
Length = 375
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 407 LDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHS 297
L + + EDEH + AHH D+V E +L GR +
Sbjct: 28 LSRKKKAPEDEHGNQGGAHHATDEDEVLELELEGREA 64
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Frame = -3
Query: 485 YHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAH-HHELGDDVR-EQDL 312
+H PE+ + + D+ +L + R H+ + + E D+ EQ+
Sbjct: 2792 HHMPESPIEHEKETEEFDHSHPESPVLSEKEREHQVTSETTTTTTVTREYNDEPEDEQEH 2851
Query: 311 SGRHSRHPGSVQETLHP----STSTLTMS 237
G HS P S E HP +T+T T++
Sbjct: 2852 QGPHSPAPSSHTEAEHPHIVETTTTTTVT 2880
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRY---HEDEHQRRLSAHH-HELGDD--- 330
++H+ A ++ + S + + E ++ H + H+ + AHH H+ G+
Sbjct: 333 KHHKKAASSSSSSSSSSSSSSSSSSSESEDEKKHAPAHHEHHEHKDGAHHEHKEGEHHEH 392
Query: 329 VREQDLSGRHSRHPGSVQETLH 264
D G H RH G T H
Sbjct: 393 AAHHDEHGVHHRHHGEHHGTHH 414
>Z73906-7|CAA98119.2| 428|Caenorhabditis elegans Hypothetical
protein D2030.7 protein.
Length = 428
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 479 EPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDV 327
EP + + + Q DN+DD M ++ R HE R + + D V
Sbjct: 177 EPVSTSPVRTMEVQQDNDDDDVMFIEIRPRIHEFPSTREIKQEENTTEDTV 227
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -3
Query: 404 DAEHRYHED-EHQRRLSAHHHELGDDVREQDLSGRHSRHPGSVQETLHPSTSTLTMSG 234
D +HR H H R HH D +D + RH+ +E + S + + SG
Sbjct: 134 DRDHRQHRPTSHHHRDHKDHHRRDDKHHHRDSNHRHAHKRRHQEEPNNNSNNGTSSSG 191
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 309
RY P + ++ S+ + + + + +RY+ EH R S+H + D ++Q
Sbjct: 12 RYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSR--SSHDPQYHQD-QQQQQQ 68
Query: 308 GRHSRHPGSVQETLH 264
H +H +Q + H
Sbjct: 69 PHHQQHSQHLQHSHH 83
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 309
RY P + ++ S+ + + + + +RY+ EH R S+H + D ++Q
Sbjct: 1652 RYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSR--SSHDPQYHQD-QQQQQQ 1708
Query: 308 GRHSRHPGSVQETLH 264
H +H +Q + H
Sbjct: 1709 PHHQQHSQHLQHSHH 1723
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 309
RY P + ++ S+ + + + + +RY+ EH R S+H + D ++Q
Sbjct: 1753 RYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSR--SSHDPQYHQD-QQQQQQ 1809
Query: 308 GRHSRHPGSVQETLH 264
H +H +Q + H
Sbjct: 1810 PHHQQHSQHLQHSHH 1824
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 309
RY P + ++ S+ + + + + +RY+ EH R S+H + D ++Q
Sbjct: 1753 RYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSR--SSHDPQYHQD-QQQQQQ 1809
Query: 308 GRHSRHPGSVQETLH 264
H +H +Q + H
Sbjct: 1810 PHHQQHSQHLQHSHH 1824
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Frame = -3
Query: 494 SGRYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQD 315
+GR H + + +S E I E R +H E GD RE
Sbjct: 593 AGRSHSVKGSFIRRFAKSSSSKEKKEVKIEVDNQSNSGIERSRSFHSHISEEGDSQRESP 652
Query: 314 LSGR--HSRHPGSVQETLHPSTST 249
SGR ++ P + ++L S ST
Sbjct: 653 SSGRQLNTSSPSTSSQSLERSMST 676
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Frame = -3
Query: 494 SGRYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQD 315
+GR H + + +S E I E R +H E GD RE
Sbjct: 746 AGRSHSVKGSFIRRFAKSSSSKEKKEVKIEVDNQSNSGIERSRSFHSHISEEGDSQRESP 805
Query: 314 LSGR--HSRHPGSVQETLHPSTST 249
SGR ++ P + ++L S ST
Sbjct: 806 SSGRQLNTSSPSTSSQSLERSMST 829
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Frame = -3
Query: 494 SGRYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQD 315
+GR H + + +S E I E R +H E GD RE
Sbjct: 593 AGRSHSVKGSFIRRFAKSSSSKEKKEVKIEVDNQSNSGIERSRSFHSHISEEGDSQRESP 652
Query: 314 LSGR--HSRHPGSVQETLHPSTST 249
SGR ++ P + ++L S ST
Sbjct: 653 SSGRQLNTSSPSTSSQSLERSMST 676
>AF040642-4|AAN73873.2| 319|Caenorhabditis elegans Hypothetical
protein C50D2.8 protein.
Length = 319
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 479 EPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHE 342
E H +++ +S HD+ D EHR+H + RR HH +
Sbjct: 274 ERRRHRSRSPHRSSHDSRDSRDSRDRREHRHHGYDRDRR---HHRD 316
>Z77655-6|CAB01139.1| 351|Caenorhabditis elegans Hypothetical
protein C56A3.7 protein.
Length = 351
Score = 27.1 bits (57), Expect = 7.6
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 309
R + E+ Q Q+D DD+ + DA + ED H HHHE + Q ++
Sbjct: 3 RQNTSESDNTQRPPIPQYDTVDDIDELTDAMDK--EDHHHHH---HHHE--HHHQHQGIA 55
Query: 308 GRHSRHPGSVQETLHPSTS 252
+ ET+H TS
Sbjct: 56 QYDTVEEVETLETVHHRTS 74
>U75587-1|AAB48299.1| 351|Caenorhabditis elegans caveolin-2
protein.
Length = 351
Score = 27.1 bits (57), Expect = 7.6
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = -3
Query: 488 RYHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLS 309
R + E+ Q Q+D DD+ + DA + ED H HHHE + Q ++
Sbjct: 3 RQNTSESDNTQRPPIPQYDTVDDIDELTDAMDK--EDHHHHH---HHHE--HHHQHQGIA 55
Query: 308 GRHSRHPGSVQETLHPSTS 252
+ ET+H TS
Sbjct: 56 QYDTVEEVETLETVHHRTS 74
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 374 HQRRLSAHHHELGDDVREQDLSGRHSRHPGSV 279
H ++ HHH++ D R++ SGR+ G++
Sbjct: 710 HHQQQQQHHHQMPMDQRKRHSSGRYDALMGAM 741
>AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5c protein.
Length = 391
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 479 EPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHE 342
EPE +T + D + ++ HR ED+ RR S+ HH+
Sbjct: 201 EPEKKKPRTSENDDKDKKHHGSSSSNS-HRRREDDKDRRQSSDHHK 245
>AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5b protein.
Length = 526
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 479 EPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHE 342
EPE +T + D + ++ HR ED+ RR S+ HH+
Sbjct: 336 EPEKKKPRTSENDDKDKKHHGSSSSNS-HRRREDDKDRRQSSDHHK 380
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 479 EPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHE 342
EPE +T + D + ++ HR ED+ RR S+ HH+
Sbjct: 381 EPEKKKPRTSENDDKDKKHHGSSSSNS-HRRREDDKDRRQSSDHHK 425
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = -3
Query: 485 YHEPEAHAAQTLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSG 306
+HE H +Q +H+ + +D + + Q+RL + HE +++Q +
Sbjct: 974 HHEELVHQQPLKRQMEHEKMQQQNVSIDEKFMMYHQNLQQRLQ-YEHEQQMQIQKQKVQE 1032
Query: 305 RH 300
+H
Sbjct: 1033 QH 1034
>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
protein Y43F4B.6 protein.
Length = 1083
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -3
Query: 455 TLQQSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVR----EQDLSGRHSRHP 288
T+ S+H D ++ +R +D +RR++ + DD R ++D+ +
Sbjct: 970 TMDDSRHQKRKDHSLLAVEMNRTTDDNVKRRVAMSPIKCDDDTRLTEEDEDIENEAMNNA 1029
Query: 287 GSVQETLHPSTSTLTMSGP 231
V+++ + +T L S P
Sbjct: 1030 TFVKDSFNSATIVLDDSQP 1048
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,739
Number of Sequences: 27780
Number of extensions: 242748
Number of successful extensions: 1021
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -