Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0538X.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 365 GAGAHLHDIGVRRQESWEHRLRYH 436
           G G H+  I ++  ++ + R+ YH
Sbjct: 206 GDGRHMEVIKIKNFDNCDQRINYH 229


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/54 (18%), Positives = 19/54 (35%)
 Frame = -3

Query: 446 QSQHDNEDDVPMILDAEHRYHEDEHQRRLSAHHHELGDDVREQDLSGRHSRHPG 285
           Q  H      P +   + ++     Q+ L AH   +    ++Q  +      PG
Sbjct: 167 QMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPG 220


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 401 RQESWEHRLRYHA 439
           R+E W H L  HA
Sbjct: 365 REEGWIHHLARHA 377


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 338 PVRGDVRTDGAGAHLH 385
           P  G++  DG+  H H
Sbjct: 617 PTVGEISQDGSSPHFH 632


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 467  HAAQTLQQSQHDNEDDVPMILDAEHRYHED 378
            H  QT  +      +   + L  E+RYHED
Sbjct: 1087 HIIQTHGEMTDKQVEAYMLSLRDENRYHED 1116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,499
Number of Sequences: 438
Number of extensions: 3078
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)