Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0537.Seq
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 30 0.38
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.88
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 28 1.5
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 27 3.6
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 3.6
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 4.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 6.2
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 25 8.2
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 25 8.2
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 8.2
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 218 PPYVRTKPALYLSDTEILNVLLMCHTRYC 132
P ++R +P L S TEI ++LL +T+YC
Sbjct: 164 PKFMRIQPILDWSYTEIWDLLLETNTKYC 192
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 672 TQPPLIMAPCTALTHSNTAPPTIVRTQTYCSTISPFVANTLSCLSKTIF*PCSN 511
T P P T+ + ++T PP + T S+ SP ++ + SC + T P N
Sbjct: 352 TTPVTPTVPPTSTSSTSTPPPPASTSSTGTSS-SPLLSTSTSCTTSTSIPPTGN 404
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 672 TQPPLIMAPCTALTHSNTAPPTIVRTQTYCSTISPFVANTLSCLSKTIF*PCSN 511
T P P T+ + ++T PP + T S+ SP + + SC + T P N
Sbjct: 298 TTPVTPTVPPTSTSSTSTPPPPASTSSTGTSS-SPLPSTSTSCTTSTSIPPTGN 350
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 487 ASLESHREIRTWLKDRF 537
+ LE+H IR WLKD+F
Sbjct: 108 SELENHGNIRQWLKDKF 124
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 681 RAQTQPPLIMAPCTALTHSNTAPPTIVRTQTYCSTISPFVANTLS 547
R +Q + ++ + + SN +P + T+ STI+ A+TLS
Sbjct: 149 RPSSQSSIFLSNWSTIFSSNASPTDSQLSPTHTSTIAELAASTLS 193
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 530 IVLDRQLRVLATNGLIVEQ*VCVRTIVGG 616
+ +D Q RVL+TNG +++ IVGG
Sbjct: 441 VQVDTQSRVLSTNGNVIDGLFAAGEIVGG 469
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 356 WNKKSRAARTSFYR*PGY 303
WN +S+ TSF R PGY
Sbjct: 2396 WNPRSKVDSTSFSRFPGY 2413
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 681 RAQTQPPLIMAPCTALTHSNTAPPTIVRTQTYCSTISP 568
R TQP P + + +SN PP + + T+ S+ SP
Sbjct: 503 RNATQPT--QPPVSQVDYSNNLPPNLDTSSTFRSSASP 538
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 92 N*VLLAINVFDGIFWELI*IRAARD 18
N +LLAIN GI+W I R D
Sbjct: 184 NPILLAINCLIGIWWSFIMFRYRHD 208
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 284 DSGNSLRSRASGKTTSAPHATSCSMLGNRQVSKRCFRRV*ERIQRARSV 430
D S++S G T+ P+ ++ + GN + F+R E+IQR +S+
Sbjct: 76 DETESIQSPFEG-FTAQPNFSNFNKQGNTMNREANFQRTNEKIQRNKSI 123
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -3
Query: 469 RSVPWPANRIRKIHAPCSLNTFSNAP 392
R+VP+ +R H C++ N P
Sbjct: 16 RTVPYSKTMVRSFHVSCAVKNSGNVP 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,727
Number of Sequences: 5004
Number of extensions: 58962
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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