Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0537.Seq
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881     29   3.7  
07_03_0136 + 14089787-14090269                                         29   4.9  
05_04_0382 + 20796567-20796810,20796894-20797750                       29   4.9  

>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
          Length = 463

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
 Frame = +3

Query: 162 IQNFGIAQIQSWLRTYVRWRRSPVSRIRPSMVK*VNTRFSPTAEIAYVAGLAVKRRPRRT 341
           + +FG    ++     V     P+S      V+  NT  S TA +A+  GL  +++P R 
Sbjct: 312 VHDFGKLDWRNSREVRVSTVSDPISATFCEPVEKANTSHSFTAGLAHSVGL--RKQPLRV 369

Query: 342 RLLVPCWVTVR-----FLKGAFGAFENVFNEHGAWIFLIRFAG 455
             +V      R     F+K A   ++    +H A + +IR AG
Sbjct: 370 YSMVKYAAIARGDVEIFMKFARAGYKEKIWDHAAGVVIIREAG 412


>07_03_0136 + 14089787-14090269
          Length = 160

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 602 TIVGGAVLECVSAVHGAMINGGWVCALHVRTAG*ADGAR 718
           T+ GG     VSA +G    G    A+  +TA   DGAR
Sbjct: 104 TVAGGGAPPVVSAQNGGQAGGEEAAAMPEKTAARPDGAR 142


>05_04_0382 + 20796567-20796810,20796894-20797750
          Length = 366

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 717 RAPSA*PAVRTCRAQTQPPLIMAPCTALTHSNTAPP 610
           R+PSA P  R     +QPP+  A  +   H+  APP
Sbjct: 133 RSPSASPRFRVYVFSSQPPVAAAVPSTSRHAGYAPP 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,947,612
Number of Sequences: 37544
Number of extensions: 410022
Number of successful extensions: 930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)