Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0537.Seq
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_8913| Best HMM Match : Linker_histone (HMM E-Value=0.61)            28   8.8  

>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 390 KHLLET*RLPNMEQEVACGADVVLPLARLRKLFPLS 283
           +H +   ++P+ EQEV  G D+  P+A+  K+ P S
Sbjct: 314 EHEVHDQKVPSYEQEVPTGEDIREPVAKRLKMEPSS 349


>SB_8913| Best HMM Match : Linker_histone (HMM E-Value=0.61)
          Length = 297

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 157 RTFKISVSLKYKAGFVRTYGGAGVLFREYVRQWLSELILGFHR 285
           R+FK ++S +  AG+ RT+ GAG + R    +W+SE I    R
Sbjct: 62  RSFKGAISYRNSAGWNRTH-GAGKVSR--AGRWVSEAIRALDR 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,817,980
Number of Sequences: 59808
Number of extensions: 472351
Number of successful extensions: 1074
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)