Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0537.Seq
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 30 1.4
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 30 1.4
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 30 1.4
AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical ... 30 1.4
AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical ... 30 1.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 5.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 5.8
U64851-3|AAC47988.1| 160|Caenorhabditis elegans Hypothetical pr... 28 7.7
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ... 28 7.7
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 264 LT*PLTDVFAKQDSGATVRTYEASFVFERYRNFECPINVSHA 139
LT PL+ FA +D YEA+ F++YR P + HA
Sbjct: 1146 LTTPLSSNFAAKDENLLKNRYEAAVPFDKYRVI-LPPTIGHA 1186
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 264 LT*PLTDVFAKQDSGATVRTYEASFVFERYRNFECPINVSHA 139
LT PL+ FA +D YEA+ F++YR P + HA
Sbjct: 1181 LTTPLSSNFAAKDENLLKNRYEAAVPFDKYRVI-LPPTIGHA 1221
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 264 LT*PLTDVFAKQDSGATVRTYEASFVFERYRNFECPINVSHA 139
LT PL+ FA +D YEA+ F++YR P + HA
Sbjct: 1146 LTTPLSSNFAAKDENLLKNRYEAAVPFDKYRVI-LPPTIGHA 1186
>AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical
protein F25G6.7a protein.
Length = 527
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 240 IRPSMVK*VNTRFSPTAEIAYVAGLAVKRRPRRTRLLVPCWVTVRFLKGAFGAFENVFNE 419
++P+M + TR+ PT+E +Y GLA R T +++P + FG + ++F
Sbjct: 177 LQPAMNSLI-TRWFPTSERSYALGLATGGRQIGTLIIIPAAGALCSQTEIFGGWPSIFYL 235
Query: 420 HG--AWIFLIRFAGHGTD 467
G +F+ + G D
Sbjct: 236 SGFIGVLFIFSYIFLGAD 253
>AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical
protein F25G6.7b protein.
Length = 513
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 240 IRPSMVK*VNTRFSPTAEIAYVAGLAVKRRPRRTRLLVPCWVTVRFLKGAFGAFENVFNE 419
++P+M + TR+ PT+E +Y GLA R T +++P + FG + ++F
Sbjct: 163 LQPAMNSLI-TRWFPTSERSYALGLATGGRQIGTLIIIPAAGALCSQTEIFGGWPSIFYL 221
Query: 420 HG--AWIFLIRFAGHGTD 467
G +F+ + G D
Sbjct: 222 SGFIGVLFIFSYIFLGAD 239
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 183 QIQSWLRTYVRWRRSPVSRIRPSMV 257
QIQ W+RT R +R+P RP V
Sbjct: 41 QIQEWMRTLRRVKRAPTRNNRPEPV 65
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 183 QIQSWLRTYVRWRRSPVSRIRPSMV 257
QIQ W+RT R +R+P RP V
Sbjct: 41 QIQEWMRTLRRVKRAPTRNNRPEPV 65
>U64851-3|AAC47988.1| 160|Caenorhabditis elegans Hypothetical
protein F28A12.3 protein.
Length = 160
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 38 KLTPKIFHQKRLSPTKLS*NIKAAIGACEVENNNACDTLIGHSKFRYRS-NTKLASYVRT 214
KLT K+F + +SP K + KA GA N C + + S N K SY +
Sbjct: 36 KLTKKMFTELNISPDKYYGDCKATSGADVCTNGTFCIKRAKIHRVGFNSINFKWTSYTKG 95
Query: 215 VA 220
A
Sbjct: 96 CA 97
>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
protein R193.2 protein.
Length = 1853
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 493 TRPVKASVR-SVPWPANRIRKIHAPCSLNTFSNAPKAPFRNL 371
T+PV SV SVP P+N AP L ++ PFRN+
Sbjct: 150 TQPVNPSVSPSVP-PSNMPPTTTAPMKLGAVCDSSSTPFRNI 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,391,842
Number of Sequences: 27780
Number of extensions: 335566
Number of successful extensions: 791
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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