Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0536.Seq
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...   129   3e-32
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...   129   3e-32
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    95   4e-22
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    27   0.15 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   5.8  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   7.6  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score =  129 bits (311), Expect = 3e-32
 Identities = 59/83 (71%), Positives = 75/83 (90%)
 Frame = +3

Query: 6   CERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKM 185
           CERAKRTLSS+TQASIEIDSLF+GID+ T+ITRARFE++N D F+  ++PV+K L+DAK+
Sbjct: 95  CERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPVDKVLQDAKI 154

Query: 186 DKAQIHDIVLVGGSTRIPKVQKL 254
            K+ +H+IVLVGGSTRIPKVQ+L
Sbjct: 155 GKSAVHEIVLVGGSTRIPKVQQL 177



 Score = 31.1 bits (67), Expect = 0.009
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 236 PQGAEALQDFFNGKELNKSINPDE 307
           P+  + + ++FNGKE  +SINPDE
Sbjct: 172 PKVQQLITEYFNGKEPCRSINPDE 195


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score =  129 bits (311), Expect = 3e-32
 Identities = 59/83 (71%), Positives = 75/83 (90%)
 Frame = +3

Query: 6   CERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKM 185
           CERAKRTLSS+TQASIEIDSLF+GID+ T+ITRARFE++N D F+  ++PV+K L+DAK+
Sbjct: 95  CERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPVDKVLQDAKI 154

Query: 186 DKAQIHDIVLVGGSTRIPKVQKL 254
            K+ +H+IVLVGGSTRIPKVQ+L
Sbjct: 155 GKSAVHEIVLVGGSTRIPKVQQL 177



 Score = 31.1 bits (67), Expect = 0.009
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 236 PQGAEALQDFFNGKELNKSINPDE 307
           P+  + + ++FNGKE  +SINPDE
Sbjct: 172 PKVQQLITEYFNGKEPCRSINPDE 195


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 95.5 bits (227), Expect = 4e-22
 Identities = 47/84 (55%), Positives = 62/84 (73%)
 Frame = +3

Query: 9   ERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMD 188
           E+AKR LSS  + ++ I++L    DF  ++TRA+FEELN D F  T++PV+K L DA M 
Sbjct: 95  EKAKRDLSSVHKTTLTIENLLADYDFSETLTRAKFEELNNDQFLKTLKPVKKVLEDADMT 154

Query: 189 KAQIHDIVLVGGSTRIPKVQKLCK 260
           K QI +IVLVGGSTRIPK+Q+L K
Sbjct: 155 KDQIDEIVLVGGSTRIPKIQQLIK 178



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 236 PQGAEALQDFFNGKELNKSINPDE 307
           P+  + ++DFF+GKELN+ INPDE
Sbjct: 171 PKIQQLIKDFFDGKELNRGINPDE 194


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 201 GFEPY-PSWHHGETSPLAPW*T*TDRRSAPRSEHE 100
           GF P+ PS H G   P  PW T  D R   +  H+
Sbjct: 468 GFGPWKPSMHGGVCDPYTPWHTFYDYRPWVQHGHQ 502


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 580 FELTGIPPAPRGVPQIEVTFDIDANGILNGFRYREVH 690
           +   G+  A   V  I+   D+D NG  N    ++ H
Sbjct: 56  YSFIGVNDADWSVLVIDPELDVDQNGFRNFTNLKKTH 92


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 216 PVQYRGFEPYPSWHHGETSPLAP 148
           PV      P+ + HHG T P +P
Sbjct: 17  PVVLDVIPPHYNIHHGATPPQSP 39


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 260 DFFNGKELNKSINPDE 307
           DF NGK L++S   D+
Sbjct: 18  DFVNGKTLHRSTRDDK 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,198
Number of Sequences: 336
Number of extensions: 3427
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)