Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0535.Seq
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.67 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 219  GIETAGGVMTTLSSVTLPSPLNRLRHSPP 305
            G +  G V +    +T PSP  R R++PP
Sbjct: 972  GCQPGGVVQSQQPIMTDPSPFKRGRYTPP 1000


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 306 TLITNPEYSSKYLR 347
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 9   HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 116
           +D ++VGG      V   L +  N K L     PDE
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,756
Number of Sequences: 438
Number of extensions: 2823
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)