Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0534.Seq
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   5.3  

>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -3

Query: 716  ELRQKSGPVQTLTFKSSDLSKYFSEVSHLTIH 621
            ELRQKSG ++T+ ++ + L K  +++   T++
Sbjct: 2290 ELRQKSGDLETVVYRGNGLEKLVTDLKPYTLY 2321


>SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 539

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = -3

Query: 677 FKSSDLSKYFSEVSHLTIHS-------IIKCIFC*EKFSVTLY 570
           FK  + +K FS+ SHLT+H+         KC  C + FS + Y
Sbjct: 409 FKCKECAKCFSQYSHLTVHTRTHSGEKPFKCTDCDKTFSHSQY 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,168,387
Number of Sequences: 59808
Number of extensions: 274944
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)