Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0533.Seq
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    27   2.1  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   4.7  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   6.3  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   6.3  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   8.3  

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 508 WKPTYKSEPELKTLINHTSKTLDNADSVKTN-NAIADNDNVTAGNEVNGSFKRILP 672
           + P  K+E     + NHT   +D+ D+   N ++  +N+N  A NE   + K++LP
Sbjct: 28  YDPARKNESTNDVIDNHTDTEIDDHDNDHENLDSNNNNENNEAFNE-KAAEKKLLP 82


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 659 LKLPLTSFPAVTLSLSAIALLVLTLSALSRVF 564
           + LP+ +   VT+SLS+  +LV T +   RVF
Sbjct: 512 MALPMENESPVTISLSSSVVLVCTSAGYVRVF 543


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 304 PASISRRQTAANQSETSQNEAQGAGDR 384
           PA +S R+T+A   ETS NE     D+
Sbjct: 313 PAILSDRETSAMLDETSDNEVADIDDQ 339


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 514 PTYKSEPELKTLINHTSKTLDNADSVKTNNAIADNDNVTAGNEV 645
           P+  S P  KT+  +  +++ NA+SV T ++I   +  +  N +
Sbjct: 489 PSPASTPVAKTINLNEIESVHNAESVSTLSSIPRTEQTSVANRI 532


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 541 KTLINHTSKTLDNADSVKTNNAIAD-NDNVTAGNEVNGSFKRILPNEEALITERFLRRIR 717
           +TL++ + K+L N D++       D  +NV+   +++   +R LP+ E    +RF   I+
Sbjct: 5   ETLVD-SQKSLINNDTLLNEKLKEDFEENVSIDVKIHEELRRALPDYEESGFQRFTWHIK 63

Query: 718 S 720
           S
Sbjct: 64  S 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,611
Number of Sequences: 5004
Number of extensions: 56365
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)