Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0533.Seq
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 35 0.057
04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231 34 0.13
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 31 1.2
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 29 3.7
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 29 4.9
04_04_1266 + 32239451-32239829,32239874-32239884 29 4.9
01_01_0500 + 3681143-3681364 29 4.9
11_06_0610 - 25449085-25453284 28 6.5
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 6.5
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 28 6.5
05_04_0075 - 17690097-17690378,17691079-17691216,17692195-176925... 28 6.5
03_05_0173 + 21502765-21504216 28 6.5
01_01_0999 - 7902813-7903466 28 6.5
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 28 8.6
02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812... 28 8.6
>03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 35.1 bits (77), Expect = 0.057
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 440 PTLDVIFVHGLYGSLSNTWRQGDGNQHT 523
P +DV+FVHGL G N+WR D T
Sbjct: 922 PLMDVVFVHGLRGGPFNSWRIADDKSST 949
>04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231
Length = 344
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 305 LHRLVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPSPTLDVIFVHGL 472
L L A+++P + P +++PG L P+P ++ L PP P L I + GL
Sbjct: 104 LQPLPAIQIPGLPPLPQLPTIQIPGLPTLQPLPTIQIPGL--PPLPQLPTIQIPGL 157
Score = 31.5 bits (68), Expect = 0.70
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 314 LVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPSPTLDVIFVHGL 472
L +++P + P +++PG L P+P ++ L PP P L I + GL
Sbjct: 79 LPTIQIPGLPPLPQLPTIQIPGLPPLQPLPAIQIPGL--PPLPQLPTIQIPGL 129
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 305 LHRLVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPSPTLDVIFVHGL 472
L L +++P + P +++PG L P+P ++ L PP L I + GL
Sbjct: 132 LQPLPTIQIPGLPPLPQLPTIQIPGLPPLQPLPAIQIPGL--PPLQPLPTIQIPGL 185
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +1
Query: 292 GHRFPASISRRQTAANQSETSQNEA--------QGAGDRPPGPRASRGVRGPARAAFS-- 441
G + A++ ++ AAN++ ++ A G G AS + A AA +
Sbjct: 235 GSKAAAAMGKKHAAANRTSSTAAAAAPRLAPMFDGGGGGQARATASAAKKQAATAAAAKR 294
Query: 442 -YPRRHLRPWAIRILKQHLASR 504
+PRRH RPW+++ + +SR
Sbjct: 295 RHPRRHRRPWSLQRRRHSTSSR 316
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 310 MQENGDRPP*ARSTPP*HRMKYGCSLTLPCPPFCGSISRDA 188
++E D P ARS PP ++ LP C ISRD+
Sbjct: 662 LEEEEDEDPWARSGPPPAAPEHAMKAALPFSATCVRISRDS 702
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 445 PRRHLRPWAIRILKQHLASRRWKPTYKSEPELKTLINHTSKTLDNAD 585
P +HLR A +L L +RR + ++TL++ + KTL AD
Sbjct: 143 PTKHLRFLARFLLVALLLARRADTVPRLTTHIRTLLDDSKKTLQEAD 189
>04_04_1266 + 32239451-32239829,32239874-32239884
Length = 129
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 472 IRILKQHLASRRWKPTYKSEPELKTLINHTSKTLDNADSVK 594
IRI+ + RR +P++K+ P KTL N+ ++ S +
Sbjct: 27 IRIITIDYSIRRDRPSFKTSPSRKTLTNYRRTRVNYTSSTR 67
>01_01_0500 + 3681143-3681364
Length = 73
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 379 DRPPGPRASRGVRGPARAAFSYPRRHLRPWAIR 477
D P G SRG +GPA + +Y L W R
Sbjct: 34 DSPWGQDCSRGTKGPALSTLAYGAPWLTAWRAR 66
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 475 RILKQHLASRRWKPTYKSEPELKTLINHTSKTLDNADSVKTNNAIAD-NDNVTAGNEVNG 651
R+ K ++A + W+ + S+P+ T N T + + + V AI D V AG ++NG
Sbjct: 85 RLRKAYIALQAWRRAFYSDPKGYT-NNWTGNDVCSYNGVICYAAIDDPKIMVVAGIDLNG 143
Query: 652 S-FKRILPNEEALITE 696
+ LP E L+T+
Sbjct: 144 ADIAGYLPPELGLLTD 159
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = +1
Query: 319 RRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPARAAFSYPRRHLR-----PWAIRIL 483
R A+ S +S + + A P A+ + + SY R PW+ R
Sbjct: 32 RSLLVASSSSSSSSSSLAASGNSASPAAAAAAASASFSPASYSPHSDRGGTKSPWSRRKR 91
Query: 484 KQHLASRRWKPTYKSEPELK 543
K+ L+ R W + S+ +L+
Sbjct: 92 KRPLSCRHWNHLFSSDGKLR 111
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 310 SISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPAR 429
S SR +T+A +SE E + RP R R RGP R
Sbjct: 68 SSSRSETSAVRSEGDAAEEKSEEQRPGRRRRKRKQRGPTR 107
>05_04_0075 -
17690097-17690378,17691079-17691216,17692195-17692552,
17692720-17692805
Length = 287
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 241 TRISFGATVVCFELMEDGHRFPASISRRQTAAN 339
T+ +G+T F ++ED H P RR A N
Sbjct: 222 TKERYGSTRRVFVVVEDDHAIPVEFQRRMVAEN 254
>03_05_0173 + 21502765-21504216
Length = 483
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Frame = +1
Query: 277 ELMEDGHRFPASISRRQTAANQSE---------TSQNEAQGAGDRPPGPRASRGVRGPA 426
+LM + H P +S A+NQSE T+ N+ G G P P A+ PA
Sbjct: 298 QLMANTHSAPTPVSTPLVASNQSESSAMTTTTTTNSNQNSGGGRTGPQPVAAGAAPNPA 356
>01_01_0999 - 7902813-7903466
Length = 217
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 349 TSQNEAQGAGDRPPGPRASRGVRGPARAAFSYPRRHLRPWAIRILKQHLASRRWKPTYKS 528
T A G G PP PRA V+ A +A + R W+ IL AS R + K+
Sbjct: 44 TRDGAAGGGGGAPPQPRA---VKAAADSALALTARGQSRWSRAILLAGAASSRRRVLVKA 100
Query: 529 EPELK 543
+++
Sbjct: 101 GGKIR 105
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Frame = +2
Query: 209 TKWRTRQRQTA---PVFHSVLRWCASSLWRTVTVFLH 310
T+W + T P SVL WC S W V H
Sbjct: 34 TRWHQGEHATLARQPPHRSVLPWCVHSAWEVAIVRAH 70
>02_02_0433 -
10178497-10178844,10180394-10180444,10181201-10181263,
10181427-10181471,10181772-10181816,10183894-10183923,
10184182-10184289,10186459-10186524,10186595-10186624,
10187147-10187501,10189323-10189345,10191421-10191447,
10192131-10192210,10192367-10192550
Length = 484
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 289 DGHRFPASISRRQT-AANQSETSQNEAQGAGDRPPGPRASRGVRGP 423
+G+R A SRR+ AA++S +S+ A G G R G GP
Sbjct: 19 EGYRLAAEGSRRRAEAASRSSSSRRAAGGVGGEEGSRRRRWGGGGP 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,815
Number of Sequences: 37544
Number of extensions: 421283
Number of successful extensions: 1343
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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