Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0532.Seq
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    26   0.20 
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    26   0.20 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.2  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   3.2  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.2  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   7.4  

>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 188 GVT*NTSTKWRTRQRQTAPVFH-SVLR 265
           G+  +T  KW+TR++   P FH S+L+
Sbjct: 121 GLLTSTGLKWQTRRKILTPAFHFSILQ 147


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 188 GVT*NTSTKWRTRQRQTAPVFH-SVLR 265
           G+  +T  KW+TR++   P FH S+L+
Sbjct: 121 GLLTSTGLKWQTRRKILTPAFHFSILQ 147


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +2

Query: 200 NTSTKWRTRQRQTAPVFHSVLRWCASSLWRTVTVFLHRLVAVRLPQIKARPVKTKL 367
           + STK RT      P F     W   +L +     L  L +  L    A P  T L
Sbjct: 457 DVSTKRRTELEDLTPTFDFTNGWANGTLAKLSPKVLEPLYSGNLAVSVATPNDTSL 512


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 164 NAWLKQDGGVT*NTSTKWRTRQRQTAPVFH 253
           ++WL    G+  +   KW+ R++   P FH
Sbjct: 108 HSWLGT--GLLTSAGPKWQNRRKILTPAFH 135


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 164 NAWLKQDGGVT*NTSTKWRTRQRQTAPVFH 253
           ++WL    G+  +   KW+ R++   P FH
Sbjct: 108 HSWLGT--GLLTSRGPKWQNRRKILTPAFH 135


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 267 GVLRAYGGRSPFSC 308
           G +R + G  PFSC
Sbjct: 25  GHIRTHTGEKPFSC 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,702
Number of Sequences: 336
Number of extensions: 2918
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)