Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0532.Seq
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 35 0.040
04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231 34 0.092
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 31 0.85
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 29 2.6
01_01_0500 + 3681143-3681364 29 3.4
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 4.6
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 28 4.6
05_04_0075 - 17690097-17690378,17691079-17691216,17692195-176925... 28 4.6
03_05_0173 + 21502765-21504216 28 4.6
01_01_0999 - 7902813-7903466 28 4.6
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 28 6.0
04_04_1266 + 32239451-32239829,32239874-32239884 28 6.0
02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812... 28 6.0
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 27 8.0
08_02_0391 - 16612929-16613867 27 8.0
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 27 8.0
08_01_0477 - 4205562-4206464 27 8.0
05_05_0086 + 22280463-22280548,22281289-22281394,22281923-222820... 27 8.0
03_02_0733 - 10801380-10802009 27 8.0
02_01_0302 - 2021221-2023305 27 8.0
>03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 440 PTLDVIFVHGLYGSLSNTWRQGDGNQHT 523
P +DV+FVHGL G N+WR D T
Sbjct: 922 PLMDVVFVHGLRGGPFNSWRIADDKSST 949
>04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231
Length = 344
Score = 33.9 bits (74), Expect = 0.092
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 305 LHRLVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPSPTLDVIFVHGL 472
L L A+++P + P +++PG L P+P ++ L PP P L I + GL
Sbjct: 104 LQPLPAIQIPGLPPLPQLPTIQIPGLPTLQPLPTIQIPGL--PPLPQLPTIQIPGL 157
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 314 LVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPSPTLDVIFVHGL 472
L +++P + P +++PG L P+P ++ L PP P L I + GL
Sbjct: 79 LPTIQIPGLPPLPQLPTIQIPGLPPLQPLPAIQIPGL--PPLPQLPTIQIPGL 129
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 305 LHRLVAVRLPQIKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPSPTLDVIFVHGL 472
L L +++P + P +++PG L P+P ++ L PP L I + GL
Sbjct: 132 LQPLPTIQIPGLPPLPQLPTIQIPGLPPLQPLPAIQIPGL--PPLQPLPTIQIPGL 185
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 30.7 bits (66), Expect = 0.85
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +1
Query: 292 GHRFPASISRRQTAANQSETSQNEA--------QGAGDRPPGPRASRGVRGPARAAFS-- 441
G + A++ ++ AAN++ ++ A G G AS + A AA +
Sbjct: 235 GSKAAAAMGKKHAAANRTSSTAAAAAPRLAPMFDGGGGGQARATASAAKKQAATAAAAKR 294
Query: 442 -YPRRHLRPWAIRILKQHLASR 504
+PRRH RPW+++ + +SR
Sbjct: 295 RHPRRHRRPWSLQRRRHSTSSR 316
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 310 MQENGDRPP*ARSTPP*HRMKYGCSLTLPCPPFCGSISRDA 188
++E D P ARS PP ++ LP C ISRD+
Sbjct: 662 LEEEEDEDPWARSGPPPAAPEHAMKAALPFSATCVRISRDS 702
>01_01_0500 + 3681143-3681364
Length = 73
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 379 DRPPGPRASRGVRGPARAAFSYPRRHLRPWAIR 477
D P G SRG +GPA + +Y L W R
Sbjct: 34 DSPWGQDCSRGTKGPALSTLAYGAPWLTAWRAR 66
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = +1
Query: 319 RRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPARAAFSYPRRHLR-----PWAIRIL 483
R A+ S +S + + A P A+ + + SY R PW+ R
Sbjct: 32 RSLLVASSSSSSSSSSLAASGNSASPAAAAAAASASFSPASYSPHSDRGGTKSPWSRRKR 91
Query: 484 KQHLASRRWKPTYKSEPELK 543
K+ L+ R W + S+ +L+
Sbjct: 92 KRPLSCRHWNHLFSSDGKLR 111
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 310 SISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPAR 429
S SR +T+A +SE E + RP R R RGP R
Sbjct: 68 SSSRSETSAVRSEGDAAEEKSEEQRPGRRRRKRKQRGPTR 107
>05_04_0075 -
17690097-17690378,17691079-17691216,17692195-17692552,
17692720-17692805
Length = 287
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 241 TRISFGATVVCFELMEDGHRFPASISRRQTAAN 339
T+ +G+T F ++ED H P RR A N
Sbjct: 222 TKERYGSTRRVFVVVEDDHAIPVEFQRRMVAEN 254
>03_05_0173 + 21502765-21504216
Length = 483
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Frame = +1
Query: 277 ELMEDGHRFPASISRRQTAANQSE---------TSQNEAQGAGDRPPGPRASRGVRGPA 426
+LM + H P +S A+NQSE T+ N+ G G P P A+ PA
Sbjct: 298 QLMANTHSAPTPVSTPLVASNQSESSAMTTTTTTNSNQNSGGGRTGPQPVAAGAAPNPA 356
>01_01_0999 - 7902813-7903466
Length = 217
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 349 TSQNEAQGAGDRPPGPRASRGVRGPARAAFSYPRRHLRPWAIRILKQHLASRRWKPTYKS 528
T A G G PP PRA V+ A +A + R W+ IL AS R + K+
Sbjct: 44 TRDGAAGGGGGAPPQPRA---VKAAADSALALTARGQSRWSRAILLAGAASSRRRVLVKA 100
Query: 529 EPELK 543
+++
Sbjct: 101 GGKIR 105
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Frame = +2
Query: 209 TKWRTRQRQTA---PVFHSVLRWCASSLWRTVTVFLH 310
T+W + T P SVL WC S W V H
Sbjct: 34 TRWHQGEHATLARQPPHRSVLPWCVHSAWEVAIVRAH 70
>04_04_1266 + 32239451-32239829,32239874-32239884
Length = 129
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 472 IRILKQHLASRRWKPTYKSEPELKTLINH 558
IRI+ + RR +P++K+ P KTL N+
Sbjct: 27 IRIITIDYSIRRDRPSFKTSPSRKTLTNY 55
>02_02_0433 -
10178497-10178844,10180394-10180444,10181201-10181263,
10181427-10181471,10181772-10181816,10183894-10183923,
10184182-10184289,10186459-10186524,10186595-10186624,
10187147-10187501,10189323-10189345,10191421-10191447,
10192131-10192210,10192367-10192550
Length = 484
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 289 DGHRFPASISRRQT-AANQSETSQNEAQGAGDRPPGPRASRGVRGP 423
+G+R A SRR+ AA++S +S+ A G G R G GP
Sbjct: 19 EGYRLAAEGSRRRAEAASRSSSSRRAAGGVGGEEGSRRRRWGGGGP 64
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 304 PASISRRQTAANQSETSQNEAQ--GAGDRPPGPRASRGVRG 420
PA ++Q A Q + GA +PPGPR G RG
Sbjct: 442 PAKNEQQQQAQPQPQPQPQPQPPAGANKQPPGPRMPDGTRG 482
>08_02_0391 - 16612929-16613867
Length = 312
Score = 27.5 bits (58), Expect = 8.0
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 304 PASISRRQTAANQSETSQNEAQGA--GDRPPGPRASRGVRGPARAAFSYPRRHLRPWAIR 477
PA+ ++ A + +S +GA R A +G RG Y R+ R WA+
Sbjct: 76 PAAAAKAVEAEDWPSSSDGMRRGAVAAARSASAAAKKGSRGGV-----YQRQPGR-WAVD 129
Query: 478 ILKQHLASRRWKPTYKSEPELK 543
L R+W T+ SE E +
Sbjct: 130 FRDSQLKVRQWLGTFPSEEEAR 151
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 347 RPVKTKLRVPGTDHLDPVPRVECVVLHEPPSPTLDVIFVHGL 472
RP K L +P H DPV + +PP PT D+ + L
Sbjct: 226 RPPKLSLGLP---HPDPVVETSSLSAVQPPEPTYDLTIMDEL 264
>08_01_0477 - 4205562-4206464
Length = 300
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 307 ASISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPARAAFSYPRRHLR 462
+S+S R TA++ S +S + G RPP P S + P+R + YP R R
Sbjct: 5 SSVSAR-TASSLSSSSSSLDDGGRGRPP-PAGST-LELPSRKHYRYPSRSAR 53
>05_05_0086 +
22280463-22280548,22281289-22281394,22281923-22282008,
22290700-22290925
Length = 167
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 385 PPGPRASRGVRGPARAAFSYPRRHLRPWAIRILK 486
PPG R R G A A P + RP +R+L+
Sbjct: 112 PPGRRPHRAAAGRAEAGRGGPAQAQRPRPLRVLR 145
>03_02_0733 - 10801380-10802009
Length = 209
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/79 (21%), Positives = 31/79 (39%)
Frame = +1
Query: 283 MEDGHRFPASISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPARAAFSYPRRHLR 462
+E P + R+ ++ ++ + N+ + + A R A AA P
Sbjct: 114 LERSRSMPGRLRRKLSSKKMTQEADNDGNASENHAAAAEAERREE-TAAAARPPPADGFE 172
Query: 463 PWAIRILKQHLASRRWKPT 519
L + L+SR WKP+
Sbjct: 173 EHRPEFLSRELSSRGWKPS 191
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 292 GHRFPASISRRQTAANQSETSQNEAQGAGDRP-PGPRASRGVRGPARAAFSYPRR 453
G R P+ + AA+ + S+ + Q A P PG RG +GP S PRR
Sbjct: 358 GQRPPSQCAA--AAAHPFDCSKAQCQAASYTPTPGGSPGRGGQGPPAPVSSPPRR 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,534
Number of Sequences: 37544
Number of extensions: 353843
Number of successful extensions: 1126
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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