Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0532.Seq
(570 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 29 3.5
SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_41539| Best HMM Match : PUD (HMM E-Value=0.42) 28 4.7
SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092) 28 4.7
SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05) 28 4.7
SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9) 28 4.7
SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9) 28 4.7
SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0) 28 6.2
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0) 28 6.2
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 27 8.2
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 27 8.2
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8) 27 8.2
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 27 8.2
SB_3026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 247 ISFGATVVCFELMEDGH--RFPASISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVRG 420
+ VV L+ED H R S+ R++ Q + PPG R RG RG
Sbjct: 224 VDLAQVVVMSNLIEDEHISRAVISLLRQKWVDGQKGDRGDMGPPGHPGPPGVRGRRGKRG 283
Query: 421 P 423
P
Sbjct: 284 P 284
>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
Length = 621
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 349 TSQNEAQ-GAGDRPPGPRASRGVRGP 423
TS E+Q G+G RP GP +G GP
Sbjct: 20 TSGTESQPGSGQRPQGPNGPQGPNGP 45
>SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 449 DVIFVHGLYGSLSNTWRQ 502
D++FVHGL G TWR+
Sbjct: 36 DIVFVHGLRGGPLKTWRR 53
>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
Length = 1582
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 225 GNVRLHPYFIRCYGGVLRAYGG 290
G VR + +R YGG +R+YGG
Sbjct: 80 GTVRSYGGTVRSYGGTVRSYGG 101
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 225 GNVRLHPYFIRCYGGVLRAYGG 290
G VR + +R YGG +R+YGG
Sbjct: 87 GTVRSYGGTVRSYGGTVRSYGG 108
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 225 GNVRLHPYFIRCYGGVLRAYGG 290
G VR + +R YGG +R+YGG
Sbjct: 94 GTVRSYGGTVRSYGGTVRSYGG 115
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 225 GNVRLHPYFIRCYGGVLRAYGG 290
G VR + +R YGG +R+YGG
Sbjct: 101 GTVRSYGGTVRSYGGTVRSYGG 122
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 225 GNVRLHPYFIRCYGGVLRAYGG 290
G VR + +R YGG +R+YGG
Sbjct: 108 GTVRSYGGTVRSYGGTVRSYGG 129
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 225 GNVRLHPYFIRCYGGVLRAYGG 290
G VR + +R YGG +R+YGG
Sbjct: 115 GTVRSYGGTVRSYGGTVRSYGG 136
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 225 GNVRLHPYFIRCYGGVLRAYGG 290
G VR + +R YGG +R+YGG
Sbjct: 122 GTVRSYGGTVRSYGGTVRSYGG 143
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 225 GNVRLHPYFIRCYGGVLRAYGG 290
G VR + +R YGG +R+YGG
Sbjct: 129 GTVRSYGGTVRSYGGTVRSYGG 150
>SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)
Length = 403
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 400 HGVQVVGPRHPELRFDWSRF-DLRQSDGD*SMQENGDRPP 284
H VQ GPR+ + W+RF Q+D D S+ ++ D P
Sbjct: 246 HQVQSFGPRNLAVNIWWARFTQFNQTDCDTSIYKDKDLVP 285
>SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)
Length = 1082
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 235 DCTRISFGATVVCFELMEDGHRFPASISRRQTAANQSETSQNEAQ 369
DC S+G V +M+DG P + + R ++++ +Q E +
Sbjct: 579 DCDASSYGIGAVLSHVMDDGQERPIAYASRTLSSSEKNYAQIERE 623
>SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
Length = 666
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 235 DCTRISFGATVVCFELMEDGHRFPASISRRQTAANQSETSQNEAQ 369
DC S+G V +M+DG P + + R ++++ +Q E +
Sbjct: 188 DCDASSYGIGAVLSHVMDDGQERPIAYASRTLSSSEKNYAQIERE 232
>SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
Length = 641
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 235 DCTRISFGATVVCFELMEDGHRFPASISRRQTAANQSETSQNEAQ 369
DC S+G V +M+DG P + + R ++++ +Q E +
Sbjct: 297 DCDASSYGIGAVLSHVMDDGQERPIAYASRTLSSSEKNYAQIERE 341
>SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0)
Length = 945
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 326 RLPQ-IKARPVKTKLRVPGTDHLDPV 400
R PQ + A P+KT R P T H DP+
Sbjct: 30 RTPQTVHADPLKTYTRTPQTVHADPI 55
>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
Length = 465
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 234 RLHPYFIRCYGGVLRAYGGRSP 299
R+H RC G ++R YGG +P
Sbjct: 199 RMHCTAARCEGSLMRPYGGENP 220
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 238 CTRISFGATVVCFELMEDGHRFPASISRRQTAANQSETSQNEAQGA 375
C +G V +MEDG P + R + ++ SQ + +GA
Sbjct: 316 CDASQYGLGAVLSHIMEDGSERPIGFASRTLSDAENNYSQLDKEGA 361
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 238 CTRISFGATVVCFELMEDGHRFPASISRRQTAANQSETSQNEAQGA 375
C +G V +MEDG P + R + ++ SQ + +GA
Sbjct: 715 CDASQYGLGAVLSHIMEDGSERPIGFASRTLSDAENNYSQLDKEGA 760
>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
Length = 796
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/64 (21%), Positives = 27/64 (42%)
Frame = +1
Query: 253 FGATVVCFELMEDGHRFPASISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPARA 432
F ++ F+++ H +S RR +A + +N + P P +S+G +
Sbjct: 307 FDLSMSAFDIIGSKHETFSSKIRRVQSAGTKRSKENPTGARNEPKPRPASSKGTMNTQKR 366
Query: 433 AFSY 444
SY
Sbjct: 367 PSSY 370
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = +1
Query: 319 RRQTAANQSETSQNEAQGAGDR----PPGPRASRGVRGP 423
++ A Q S A GDR PPGPR G +GP
Sbjct: 472 QKAVADRQENKSHGAAGPKGDRGPAGPPGPRGLPGAQGP 510
>SB_3026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 915
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 238 CTRISFGATVVCFELMEDGHRFPASISRRQTAANQSETSQNEAQGA 375
C +G V +MEDG P + R + + SQ + +GA
Sbjct: 603 CDATHYGLGAVLSHIMEDGSERPVGFASRTLSDAEKNYSQLDKEGA 648
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,758,632
Number of Sequences: 59808
Number of extensions: 380959
Number of successful extensions: 1166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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