Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0532.Seq
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34310.2 68417.m04876 expressed protein                             33   0.10 
At4g34310.1 68417.m04877 expressed protein                             33   0.10 
At2g01620.1 68415.m00088 expressed protein                             31   0.72 
At4g25450.1 68417.m03665 ABC transporter family protein similar ...    29   1.7  
At1g78620.2 68414.m09163 integral membrane family protein contai...    29   1.7  
At1g78620.1 68414.m09162 integral membrane family protein contai...    29   2.2  
At1g61170.1 68414.m06893 expressed protein                             28   5.0  
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P...    27   6.7  

>At4g34310.2 68417.m04876 expressed protein 
          Length = 1035

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 440  PTLDVIFVHGLYGSLSNTWRQGDGNQHTKA 529
            P  DVIF+HGL G    TWR  +    TK+
Sbjct: 951  PEFDVIFLHGLRGGPFKTWRIAEDKSSTKS 980


>At4g34310.1 68417.m04877 expressed protein 
          Length = 1228

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 440  PTLDVIFVHGLYGSLSNTWRQGDGNQHTKA 529
            P  DVIF+HGL G    TWR  +    TK+
Sbjct: 951  PEFDVIFLHGLRGGPFKTWRIAEDKSSTKS 980


>At2g01620.1 68415.m00088 expressed protein
          Length = 292

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 338 IKARPVKTKLRVPGTDHLDPVPRVECVVLHEPPSPTLDVIFVHGLYG 478
           + A P+ TK+ VPG   L P   +ECV      +  L+ + ++G+ G
Sbjct: 103 VDANPLITKIIVPGCSGLTPEGIMECVESLSKNNHKLETLHINGVNG 149


>At4g25450.1 68417.m03665 ABC transporter family protein similar to
           multidrug resistance protein 2 SP:P21440 from [Mus
           musculus]
          Length = 714

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 222 HGNVRLHPYFIRCYGGVLRAYGGRSPF 302
           HG+ R+     RC   VLR YGG  PF
Sbjct: 11  HGSTRVLVARRRCQASVLRPYGGLKPF 37


>At1g78620.2 68414.m09163 integral membrane family protein contains
           Pfam domain PF01940: Integral membrane protein
          Length = 342

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 313 ISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPARA 432
           I+   TAA + + +Q EAQG  ++  G R  R V G + A
Sbjct: 147 INLNGTAATKVKMTQKEAQGVAEKRKGRRGPRSVIGSSAA 186


>At1g78620.1 68414.m09162 integral membrane family protein contains
           Pfam domain PF01940: Integral membrane protein
          Length = 333

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 328 TAANQSETSQNEAQGAGDRPPGPRASRGVRGPARA 432
           TAA + + +Q EAQG  ++  G R  R V G + A
Sbjct: 143 TAATKVKMTQKEAQGVAEKRKGRRGPRSVIGSSAA 177


>At1g61170.1 68414.m06893 expressed protein
          Length = 251

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 292 GHRFPASISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVRGPA 426
           G+ +P   + +      + T      G+G R PG R+ R  R PA
Sbjct: 140 GNNYPTRRTDQSPRKRNNGTCNGARYGSGVRDPGERSGRRSRSPA 184


>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 988

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 277 ELMEDGHRFPASISRRQTAANQSETSQNEAQGAGDRPPGPRASRGVR-GPA 426
           EL+ED  R    +S      N  E   ++ + +GD  P P A+  VR GPA
Sbjct: 421 ELVEDDVRSAGGLSPNVQRDNV-EPVGDDVRSSGDMSPNPSAANNVREGPA 470


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,390
Number of Sequences: 28952
Number of extensions: 256730
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)