Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0531.Seq
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   2.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.1  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   8.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.1  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 663 GTGQRIQILRTRRANGD 613
           G G  +Q++ TR ANGD
Sbjct: 167 GNGTGVQLVPTRLANGD 183


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 755 PHMHWDREWYFTTEESRILLVNNMEEIL 672
           PH      WY+  + S +L V NM  IL
Sbjct: 621 PHQQHLDAWYWVMDWSDMLSVGNMTLIL 648


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 334 CSERHGTDKTEFLWQSSDGSEV 269
           CS  HG    + +W  SDG+ V
Sbjct: 45  CSA-HGNPTPDIIWVRSDGTAV 65


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 662 PVGTGSLPYY*PAEYVTLRW 721
           P+G+G + +Y   EY    W
Sbjct: 193 PIGSGGMVWYQMFEYAVGHW 212


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 662 PVGTGSLPYY*PAEYVTLRW 721
           P+G+G + +Y   EY    W
Sbjct: 507 PIGSGGMVWYQMFEYAVGHW 526


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 662 PVGTGSLPYY*PAEYVTLRW 721
           P+G+G + +Y   EY    W
Sbjct: 740 PIGSGGMVWYQMFEYAVGHW 759


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = +3

Query: 156 LQTLFPARQNNCRGVYVIRFRRQVSTYRWRSQRSTCAVTSLPSLLCHKNSVLSVPWRSEH 335
           L +LFP    N    Y    + Q S+Y+  S      + SL   + H     +  +  +H
Sbjct: 57  LPSLFPFSPCNNTANYKSEAQNQPSSYKQPSSDMADVLLSLKHAVVHPGQSPAEKYDQQH 116

Query: 336 PRQNMVRVMP 365
                V + P
Sbjct: 117 LYHPQVLLSP 126


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 662 PVGTGSLPYY*PAEYVTLRW 721
           P+G+G + +Y   EY    W
Sbjct: 740 PIGSGGMVWYQMFEYAVGHW 759


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,044
Number of Sequences: 336
Number of extensions: 4519
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)