Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0531.Seq
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 38 0.002
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 31 0.24
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 30 0.31
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 28 1.3
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 27 2.2
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 5.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 6.7
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 6.7
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 25 8.9
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 25 8.9
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 37.9 bits (84), Expect = 0.002
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -1
Query: 505 IVSAESIVRNLMYGMRDC-LAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWR-GC 332
I + ES++R + G FG + +LPD+FG S Q+P I G+ R + +
Sbjct: 370 IPNGESLIRQFLLGQHFFEKEFGVRCRTFWLPDTFGYSSQIPQICRLCGMDRFLTQKLSW 429
Query: 331 SERHGTDKTEFLWQSSDGSEV 269
+ + + F W + DGS+V
Sbjct: 430 NNINSFPTSTFNWVALDGSQV 450
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 688 IWKRSCADWNRTTNTNITYSTGKRRSSKIISRETGKQRPCEETGRSRQ 545
+W+R WN + YS GKR S +R G RP E + R+
Sbjct: 43 LWRRFVKRWNDGKMKSKWYSLGKRISQPSYARLVGPSRPTLENLQDRR 90
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 458 THSVHQITDDGFRRNNRVSVWVYQGPIINLPASTCFFTRSLFSGFTRNNLRGSPFARRVR 637
TH+V+ +DDG+ +++ + I P + ++ R N S +++ V
Sbjct: 124 THTVNSNSDDGYENSSKNEYLDFNSEISASPVNEPMTHSQSYTSIDRLNSSSSHYSKDVP 183
Query: 638 NIC----IRCPVPV 667
+C I CP P+
Sbjct: 184 LLCGSLTIDCPTPI 197
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 466 RTSDYGRWIPQKQSCIGLGIPGADNQLAGFYLFLHTVFVFRF 591
R +DY +I + + + P D + G Y F HTVF F
Sbjct: 110 RMTDYWIFINILHNALLVLFPHVDTERRGLYRFRHTVFTLSF 151
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 508 TIVSAESIVRNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHI 377
T++ S++ ++ G D L +G P+ LP+ + +S +PH+
Sbjct: 92 TLMEGFSLIPLILEGKIDDLLYGLPVAKSRLPELYELSKIVPHL 135
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 243 AIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPL 112
AI +E+ +++ ++ D+ E ++ TK PN ++PL
Sbjct: 50 AIANQTTVNESDVKRNVEKINDIYECSNNTKSPCFPNSDSRIPL 93
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 676 SCADWNRTTNTNITYSTGKRRSSKIISRETGKQRPCEET 560
S ++ TT T +TY+T ++ ++ T RP EET
Sbjct: 549 SSSNEETTTTTQVTYTTSPEETTTTMTTTTCSSRP-EET 586
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 225 PADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNI 100
P E+G+ + S F VL K+ EIL G + L ++
Sbjct: 472 PGGEDGMSDEVKSEFPVLSKSVTMAEILSSKGLESPQLTNSV 513
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 272 SDGAGAPLATPSVSTYLPTKTDYVNASTVILTC 174
+ G G +AT + Y P D TVILTC
Sbjct: 13 NSGLGFGIATRLLQFYQPRLQDEPEVFTVILTC 45
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 265 PSLRYRHCFATKTRFYQYRGAPNIR 339
P L Y C+ R Y+Y G P ++
Sbjct: 75 PGLGYAACYKIVQRIYKYSGQPIVK 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,397
Number of Sequences: 5004
Number of extensions: 76033
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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