Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0531.Seq
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0383 + 18401880-18403034                                         29   5.3  
08_01_0026 - 189876-190073,190473-190559,190654-190877,190961-19...    28   7.1  
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886...    28   7.1  
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743...    28   7.1  
04_04_0494 - 25619550-25619926,25620004-25620106                       28   9.3  
03_05_0562 + 25648581-25648841,25650243-25650626                       28   9.3  
01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405     28   9.3  

>12_02_0383 + 18401880-18403034
          Length = 384

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 401 HVRATAAYLQWIWH-YPHHVLARMFGA 324
           H+RA+ A L  +WH + H  +AR FGA
Sbjct: 95  HLRASLADLAAVWHSFEHPNVARFFGA 121


>08_01_0026 -
           189876-190073,190473-190559,190654-190877,190961-191261,
           191369-191467,193465-193602,193691-193879
          Length = 411

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 275 RSDGAGAPLATPSVSTYLPTKTD---YVNASTVILTC 174
           RSDG GAPLAT   + +L    D   Y  A++   TC
Sbjct: 318 RSDGGGAPLATDIANGHLVCGCDNIAYCKANSTFGTC 354


>07_03_1297 +
           25587445-25587502,25587646-25587740,25588426-25588629,
           25588843-25588959,25589084-25589212,25589591-25589717,
           25590174-25590277,25590369-25590473,25590969-25591190,
           25591869-25591967
          Length = 419

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 249 GYAIGKYLPADENGLRKRLDSYFDVLEKASVT 154
           G A+ K + A E G +KR + + D++E+ SVT
Sbjct: 166 GTAVTKSVVATEPGGKKREEIFVDIIERISVT 197


>07_03_1027 -
           23371826-23372006,23372110-23372171,23372595-23374335,
           23374609-23374704,23374967-23375043,23376807-23377307
          Length = 885

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 439 EPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQS 287
           E  + G++PD+F +S  LP       I R M   G + ++G D   F+  S
Sbjct: 395 EMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSS 445


>04_04_0494 - 25619550-25619926,25620004-25620106
          Length = 159

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -2

Query: 390 NCRISTMDLALPAPCSGADVRSATVLIKPSFCGKAVTVAK*RRR 259
           NCRI      L A       RS  +L+KPS  GK   V    RR
Sbjct: 73  NCRIEGNQDTLFAQAYRQFYRSCVILVKPSLPGKPTVVTAHGRR 116


>03_05_0562 + 25648581-25648841,25650243-25650626
          Length = 214

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/87 (22%), Positives = 36/87 (41%)
 Frame = -2

Query: 267 RRRCSAGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVM 88
           RRRC+AG     Y P  E      +   F     + + +EI  P  H    +   ++E  
Sbjct: 49  RRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEI--PVQHRGDAVSSLVYEAN 106

Query: 87  DKLREIYPQRKFVMSRFEEVFEKIEAQ 7
            ++R+        +S  ++  E ++AQ
Sbjct: 107 ARVRDPIYGCVGAISSLQQQVEALQAQ 133


>01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405
          Length = 699

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 544 VDYRPLVYPDR-YTIVSAESIVRNLMYGMRDCLAFGEPMKIGYLPDSFGMS 395
           + Y  L+ P R  T+++  S++R L  G R  LAFG    +   PD++  +
Sbjct: 141 LSYARLLLPRRPATLLAHNSLLRALARGRRPHLAFGAFRDLPLAPDNYSFT 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,127,368
Number of Sequences: 37544
Number of extensions: 539297
Number of successful extensions: 1534
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)