Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0531.Seq
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29455| Best HMM Match : Pentaxin (HMM E-Value=0.01) 32 0.44
SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016) 30 1.8
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_16328| Best HMM Match : Pentaxin (HMM E-Value=4.5e-08) 29 4.1
SB_11565| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_19941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 28 9.5
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_38879| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 9.5
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_29455| Best HMM Match : Pentaxin (HMM E-Value=0.01)
Length = 147
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -1
Query: 685 WKRSCADWNRTTNTNITYSTG--KRRSSKIISRETGKQRPCEE 563
W CA W +TN TY G K K +S E QRP +
Sbjct: 21 WHHYCASWTDSTNAWKTYLNGTLKDHGEKALSMEDSLQRPLHD 63
>SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)
Length = 486
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 253 GAPAPSLRYRHCFATKTRF-YQYRGAPNIRARTWCG*CQIHCRYAAVARTCQRNLVNNLF 429
G + + R R+ +TR+ + YR ++ +RT RYA RT + +
Sbjct: 249 GGYSHTYRTRYSLTYRTRYSHTYRTRYSLTSRTRYS-LTYRTRYARTYRTRYSHTYRTRY 307
Query: 430 SSARQTRGSHAFRT 471
S +TR SH +RT
Sbjct: 308 SHTYRTRYSHTYRT 321
>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 508 CIGLGIPGADNQLAGFYLFLHTVFVF 585
C G P D+ LAGF++F++ FV+
Sbjct: 274 CTGCFKPQGDSNLAGFFMFVNITFVY 299
>SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -1
Query: 685 WKRSCADWNRTTNTNITYSTG--KRRSSKIISRETGKQRPCEE 563
W CA W +TN TY G K K +S E Q P +
Sbjct: 225 WHHYCASWTDSTNAWKTYLNGTLKDHGEKALSMEDSLQCPLHD 267
>SB_16328| Best HMM Match : Pentaxin (HMM E-Value=4.5e-08)
Length = 253
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -1
Query: 685 WKRSCADWNRTTNTNITYSTG--KRRSSKIISRETGKQRPCEE 563
W CA W +TN TY G K K +S E Q P +
Sbjct: 98 WHHYCASWTDSTNAWKTYLNGTLKDHGEKALSMEDSLQCPLHD 140
>SB_11565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -1
Query: 685 WKRSCADWNRTTNTNITYSTG--KRRSSKIISRETGKQRPCEE 563
W CA W +TN TY G K K +S E Q P +
Sbjct: 43 WHHYCASWTDSTNAWKTYLNGTLKDHGEKALSMEDSLQCPLHD 85
>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 201 YVIRFRRQVSTYRWRSQRSTCAVTSLPSLLCHKNSVLSVPWRSEHPR 341
++ RF+R YRW +R + +LP L SV W + HPR
Sbjct: 182 FITRFQRMTEFYRWDDERK---LRALPLYLTGNASV----WFNSHPR 221
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/79 (24%), Positives = 42/79 (53%)
Frame = -2
Query: 243 AIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMDKLREIYP 64
A+ + L + E +R FD ++K + +K +++ +G+D++PL+ + V + L ++
Sbjct: 429 AVQEQLLSSETSDEER-GQVFDYMKK-NQSKILMILDGYDELPLEAS--NVKESLGKVIT 484
Query: 63 QRKFVMSRFEEVFEKIEAQ 7
++ F MS EA+
Sbjct: 485 RKDFAMSNVLVTIRSQEAR 503
>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 201 KRLDSYFDVLEKASVTKEIL-LPNGHDQMPLQQNIFEVMDKLREIYPQRKFVMSRFEEVF 25
K L Y D L+ T E L + + L+ E MDK+ + Y + K ++ + + +
Sbjct: 156 KELSEYLDELKMLQETNEELEMKLDESKRELEAATTE-MDKIADEYTKLKTILQQSDLIL 214
Query: 24 EKIEAQRD 1
E++ +RD
Sbjct: 215 EEMRRERD 222
>SB_19941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 479 TDDGFRRNNRVSVWVYQGPIINLPASTCFFTR 574
T+ GF +N W+YQ P+++LP++ FT+
Sbjct: 72 TNGGFIKNQW---WIYQTPMVDLPSTNGGFTK 100
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 201 YVIRFRRQVSTYRWRSQRSTCAVTSLPSLLCHKNSVLSVPWRSEHPR 341
++ RF+R YRW R + +LP L SV W + HPR
Sbjct: 2519 FITRFQRMTEFYRWDDDRK---LRALPLYLTGNASV----WFNSHPR 2558
>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 201 YVIRFRRQVSTYRWRSQRSTCAVTSLPSLLCHKNSVLSVPWRSEHPR 341
++ RF+R YRW R + +LP L SV W + HPR
Sbjct: 198 FITRFQRMTEFYRWDDDRK---LRALPLYLTGNASV----WFNSHPR 237
>SB_38879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 654 QRIQILRTRRANGDPRRLFRVKPENKDRVKKQVEA 550
+ ++ILR+ AN D + L + K EN+ + + +E+
Sbjct: 216 ESVRILRSYDANADKKSLLKAKTENRQDITEILES 250
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 153 WLQTLFPARQNNCRGVYVIRFRRQVSTYRWRSQRSTCAVTSL 278
W++T + N+ R + RFR +V + S R+T A+ SL
Sbjct: 3482 WVKTYKVSYGNSPRRMRFYRFRGRVKVFLGNSDRNTVAIRSL 3523
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 234 KYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMDK 82
K A+ N LR++LD Y + LEK + EI L N D+ + + + +DK
Sbjct: 1862 KQKDAEINSLREQLDEYRNRLEKGTGDLEIHLRNIGDKSEIYRK--DALDK 1910
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,419,846
Number of Sequences: 59808
Number of extensions: 619014
Number of successful extensions: 1725
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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