Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0531.Seq
(763 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27920.1 68417.m04007 expressed protein various predicted pro... 33 0.21
At5g38880.1 68418.m04702 expressed protein 30 1.9
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 29 3.4
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 29 3.4
At3g20660.1 68416.m02615 organic cation transporter family prote... 29 3.4
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 28 5.9
At4g34250.1 68417.m04868 fatty acid elongase, putative similar t... 28 7.8
At3g63500.2 68416.m07153 expressed protein 28 7.8
At3g63500.1 68416.m07152 expressed protein 28 7.8
>At4g27920.1 68417.m04007 expressed protein various predicted
proteins
Length = 183
Score = 33.1 bits (72), Expect = 0.21
Identities = 27/94 (28%), Positives = 41/94 (43%)
Frame = +2
Query: 299 KLGFISTVALRTSAPEHGAGNAKSIVDMRQLPGHAKGIW*ITYFHRLAKREAVTHSVHQI 478
++G + V L++ P + I+D + H GI + HRL K + T S+H
Sbjct: 70 EVGSVREVDLKSGLPATKSTEVLEILDDNE---HILGIRIVGGDHRL-KNYSSTISLHSE 125
Query: 479 TDDGFRRNNRVSVWVYQGPIINLPASTCFFTRSL 580
T DG + +V P N TCFF +L
Sbjct: 126 TIDGKTGTLAIESFVVDVPEGNTKEETCFFVEAL 159
>At5g38880.1 68418.m04702 expressed protein
Length = 796
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 408 PLACPGNCRISTMDLALPAPCSGADVRSATVLIKPSFC 295
P A P CRIS L PA G+D A+VL FC
Sbjct: 625 PSAIPSICRISAA-LQYPAGLEGSDASLASVLESLEFC 661
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -2
Query: 249 GYAIGKYLPADENGLRKRLDSYFDVLEKASVT 154
G A+ K + A++ G R+R + + D++EK SVT
Sbjct: 167 GTAVTKSVVANDPGGRRREEIFVDIIEKISVT 198
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -2
Query: 249 GYAIGKYLPADENGLRKRLDSYFDVLEKASVT 154
G A+ K + A++ G R+R + + D++EK SVT
Sbjct: 167 GTAVTKSVVANDPGGRRREEIFVDIIEKISVT 198
>At3g20660.1 68416.m02615 organic cation transporter family protein
similar to organic cation transporter OCT3 [Rattus
norvegicus] GI:3273722, organic cation transporter 3
[Mus musculus] GI:4454795; contains Pfam profile
PF00083: major facilitator superfamily protein
Length = 534
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 234 YRWRSQRSTCAVTSLPSLLCHKNSVLSVPWRSEHPRQNMVR 356
Y +RS R V+SLPSLL ++ +P+ SE PR +VR
Sbjct: 241 YVFRSWRELFIVSSLPSLLF---LLIVIPFISESPRWYLVR 278
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 434 RLAKREAVTHSVHQITDDGFRRNNRVSVWVYQGPIINLPASTC 562
RL++ + V + H + DDG NN + V P+ ++ C
Sbjct: 125 RLSREKVVMSNTHALQDDGVPENNNATNHVEPVPLNSIHPEAC 167
>At4g34250.1 68417.m04868 fatty acid elongase, putative similar to
fatty acid elongase 1 (Fae1), Arabidopsis thaliana,
U29142 [GI:881615]
Length = 493
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 177 VLEKASVTKEILLPNGHDQMPLQQNI 100
+LE++ + +E +P G +PLQQN+
Sbjct: 127 ILERSGLGQETYVPEGLQTLPLQQNL 152
>At3g63500.2 68416.m07153 expressed protein
Length = 1162
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 394 RTCQR-NLVNNLFSSARQTRGSHAFRTSDYGRWIPQKQSCIGLGIPGADNQLAGF 555
R C+ VN +FSS++ +RG + +D + +S + +G+P A N++ GF
Sbjct: 921 RFCKELEYVNKIFSSSKDSRGKQLRQAAD--AMLASLKSKL-IGLPEACNRILGF 972
>At3g63500.1 68416.m07152 expressed protein
Length = 887
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 394 RTCQR-NLVNNLFSSARQTRGSHAFRTSDYGRWIPQKQSCIGLGIPGADNQLAGF 555
R C+ VN +FSS++ +RG + +D + +S + +G+P A N++ GF
Sbjct: 646 RFCKELEYVNKIFSSSKDSRGKQLRQAAD--AMLASLKSKL-IGLPEACNRILGF 697
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,490
Number of Sequences: 28952
Number of extensions: 415660
Number of successful extensions: 1144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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