Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0529X.Seq
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    29   0.16 
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   0.64 
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   0.85 
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   3.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   3.4  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    24   6.0  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    24   6.0  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    24   6.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.9  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    24   7.9  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   7.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    24   7.9  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   IVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVL 115
           I VSLT S+     +  ++TS+  + + WGY+   VL
Sbjct: 231 IAVSLTSSTAYATNILSAQTSFYKQNLSWGYKILIVL 267


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 229 HERLKHPNRLTQQMSISPTDLSLSQEDSSTISKLGDS 339
           HE+L HP    +   I     SLSQ  SS +++LG S
Sbjct: 313 HEKL-HPGTFVRSQKIPAIKASLSQRVSSVMTELGVS 348


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 16  LNRFFKEHGSGYPESHILLVQRNYLGLQIQECFEVFERKGSL 141
           +N+ FK HG    + ++ L   +Y+GL  + C +  ++  SL
Sbjct: 275 INQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQWSDKARSL 316


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 74  TSRMCDSG*PLPCSLKNRLRRPQ 6
           T R+   G P+P  L +R+RRP+
Sbjct: 219 TIRLMRDGMPMPKELASRIRRPE 241


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 107 NVLKYSKEKEAYAIDIENLDTVEQVET 187
           NVL    EK  Y + ++ LD+VEQ+ +
Sbjct: 882 NVLLLLAEKILYELPLDALDSVEQINS 908


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 14  SLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLK 118
           S+  +S+ +  ++ S + Y SKE +  YR   +L+
Sbjct: 105 SINIASQKLAGLSHSTSDYFSKEYLTAYRRSELLQ 139


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 65  SYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQVE 184
           +YL  +    +  KN+L + KE E    D EN D +E  E
Sbjct: 658 AYLEAKERQEFTKKNLLLFCKEDEFLYSDQENEDLLESFE 697


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 167 TVEQVETPLCSACR-LKDFEDNMKDSNTPTA 256
           T+++ ++   + CR L+D+E+  K+SN  T+
Sbjct: 139 TLKKTKSAYYNKCRNLEDYEEESKESNETTS 169


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 178 SRDAALQRLPSQGFRR*HERLKHPNRLTQQMSISPTDLSLSQEDSSTISK 327
           S+   L    S GF    E + HP R   Q  +  TDL  S E   T  K
Sbjct: 2   SKKPVLNLDTSNGFSE--EYISHPERNDNQGIVEITDLVFSSESKLTQRK 49


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 244 HPNRLTQQMSISPTDLSLS 300
           HP+ L   +SI+P  LSLS
Sbjct: 69  HPDTLPTSLSINPKKLSLS 87


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 16  LNRFFKEHGSGYPESHILLVQRNYLGLQIQECF 114
           L RFF  HG+G    H         GL +  C+
Sbjct: 711 LKRFFVAHGTGDDNVHFQHSMHLMDGLNLANCY 743


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +3

Query: 21  PVLQRTWERLPRVAH--PTCPKKLSGATDSRMF*SIRKKRKPMRLTLKTWI 167
           P+ QR  E   R  +  PTC K +           +  +R+PM     TWI
Sbjct: 293 PLHQRCHEEYIRTNYRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWI 343


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 175 FHGIQVFNVNRIGFLFFRILQNILESVAPDN 83
           +H I V N N +      +  + LESV P N
Sbjct: 247 YHEISVMNPNYVNHSLPNVRPHTLESVMPHN 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,879
Number of Sequences: 5004
Number of extensions: 30915
Number of successful extensions: 90
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)