Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0529X.Seq
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38... 30 0.59
08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011 29 1.4
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 1.4
08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847 27 3.1
01_05_0098 - 18088331-18088376,18088703-18088935,18089078-180892... 27 4.1
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 27 5.5
02_05_0760 + 31548272-31548508,31548746-31548787,31548837-31550006 27 5.5
11_04_0274 - 15667178-15667444,15668352-15668678,15669430-156695... 26 7.2
08_02_0744 - 20659326-20659580,20659748-20660005,20660103-206615... 26 7.2
03_02_0578 + 9603118-9605633,9605766-9605781 26 9.6
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 26 9.6
>03_01_0046 -
384444-384460,384649-384770,385144-385301,385379-385479,
385748-385823,385983-386093,386165-386356,386729-387024,
388299-388497
Length = 423
Score = 29.9 bits (64), Expect = 0.59
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGY-RFKNVL-KYSKEKEAYAIDIENLDTVE 175
EIV + TGSSKN R + S +I Y RF V + +KE++++ +DT
Sbjct: 122 EIVKNGTGSSKNHAIALPERVNPTSLSLILDYCRFHQVPGRSNKERKSFDEKFVRIDTER 181
Query: 176 QVE-TPLCSACRLKDFED 226
E T + +LK D
Sbjct: 182 LCELTSAADSLQLKPLVD 199
>08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011
Length = 508
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 301 GLKIGLLAKWTFVGSSGWGV*VFHVIFEILETAGAAER 188
GL +LA TF+G +GW + FHV+ I T G R
Sbjct: 148 GLFSIMLASTTFMGIAGWRI-AFHVVALISVTVGILVR 184
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 265 VGSSGWGV*VFHVIFEILETAGAAERRLDLFHGIQVF 155
+ SGWG F + + + E+RLDLFH ++++
Sbjct: 150 LSESGWGE--FEIAITLYFHSDVCEKRLDLFHQLKLY 184
>08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847
Length = 426
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 125 KEKEAYAIDIENLDTVEQVETPLCSACRLKDFEDNMKDSN 244
KEK+A A D E T+E E CR KD + + D N
Sbjct: 207 KEKKAKAKDKEGFKTIEMTEK---FYCRAKDMYEILMDEN 243
>01_05_0098 -
18088331-18088376,18088703-18088935,18089078-18089203,
18089387-18089494,18089646-18089709,18090256-18090409,
18090551-18090671,18091095-18091472
Length = 409
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 169 RGTSRDAALQRLPSQGFRR*HERLKHPNRLTQQMSISPTDLSLSQEDSSTISK 327
R S + +L S FR+ + HPN+LT+Q+S + L +E S+ +S+
Sbjct: 344 RHPSPPKKINKLKSLIFRK--KTKDHPNKLTKQLSAAGMVEELFEEGSAMLSE 394
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 92 GYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKDFEDNMKDSN 244
G + L+Y++ KE ID+E LD +++ +A RLK E K S+
Sbjct: 296 GQKRAKKLQYAQSKEVDHIDLEELDKFSKLQNEQ-NANRLKVLEIQQKLSS 345
>02_05_0760 + 31548272-31548508,31548746-31548787,31548837-31550006
Length = 482
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 16 LNRFFKEHGSGYPESHILLVQRNYLGLQIQECFEVFERKG 135
L RFF SG E + ++ R+ ++ + CF +FE G
Sbjct: 30 LVRFFLRRTSGGKERLVAVLDRHVKVVRTEHCFLLFEELG 69
>11_04_0274 -
15667178-15667444,15668352-15668678,15669430-15669563,
15669669-15669726,15669842-15669961,15670814-15670876,
15671388-15671539,15673002-15673116,15673907-15673981,
15674474-15674538,15675020-15675128
Length = 494
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 284 VGEMDICWVKRLG-C-LSLSCYLRNP*DGRRCRAASRLVPRYP 162
+GE D + R G C ++C +P D + AA+R+ YP
Sbjct: 142 IGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYP 184
>08_02_0744 -
20659326-20659580,20659748-20660005,20660103-20661575,
20661677-20661835,20661948-20662074,20662155-20662486,
20662574-20663383,20663772-20664110,20664187-20664340,
20664427-20665143,20665699-20665967
Length = 1630
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 229 HERLKHPNRLTQQMSISPTDLSLSQEDSSTISKLGDS 339
H N + ++ SISP LSL++E IS+ +S
Sbjct: 576 HSEATRVNGMFKENSISPGSLSLNEEGEGVISEHRES 612
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 25.8 bits (54), Expect = 9.6
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +3
Query: 120 IRKKRKPMRLTLKTWIPWN 176
+R+K+KP++ TW+P++
Sbjct: 443 LRRKKKPVKQPSNTWVPFS 461
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 169 GIQVFNVNRIGFLFFRILQNILESVAPDNFFGQVGCATLGNRSHV 35
G + V IG+ FF + NI + + V C TL + S V
Sbjct: 114 GTDSYLVRTIGYSFFAAVFNIGWAATQVSHMSMVNCMTLNSTSRV 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,281,811
Number of Sequences: 37544
Number of extensions: 197984
Number of successful extensions: 500
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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