Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0529X.Seq
(351 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9469| Best HMM Match : IRK (HMM E-Value=0) 59 1e-09
SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20) 56 6e-09
SB_35031| Best HMM Match : IRK (HMM E-Value=2.2e-06) 49 1e-06
SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8) 29 1.1
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05) 28 2.4
SB_52697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_32158| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_9908| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14) 27 4.3
SB_6692| Best HMM Match : WD40 (HMM E-Value=0.0056) 27 4.3
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 27 5.7
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_57773| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7) 26 7.5
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 26 9.9
>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
Length = 520
Score = 58.8 bits (136), Expect = 1e-09
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEA-YAIDIENLDTVEQ 178
E+V L G+ + G +TQ++TSY+ +EI+WGY FKN L ++ K + ++ + D V
Sbjct: 342 ELVAILEGTVEATGMLTQAKTSYIGEEILWGYEFKNTLDHTSWKAGRFRVNYSHFDRVVP 401
Query: 179 VETPLCSA 202
V+TP SA
Sbjct: 402 VDTPRVSA 409
>SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)
Length = 610
Score = 56.4 bits (130), Expect = 6e-09
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKE-AYAIDIENLDTVEQ 178
E+V+ L G ++ G TQ+RTSY++ EI WG+ F ++ Y K AY ID
Sbjct: 471 EVVLILEGIVESTGMTTQARTSYIADEIHWGHNFTELVTYDCFKNGAYHIDFSRFHDTYP 530
Query: 179 VETPLCSACRL 211
V+TP CSA L
Sbjct: 531 VDTPRCSAREL 541
>SB_35031| Best HMM Match : IRK (HMM E-Value=2.2e-06)
Length = 127
Score = 48.8 bits (111), Expect = 1e-06
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSK-EKEAYAIDIENLDTVEQ 178
EIV+ L G + G TQ +TSYLS+EI+WG+ F V S + + YA D D +++
Sbjct: 24 EIVIVLDGIVEATGMNTQPKTSYLSQEILWGHDFLQVADQSPFDVQYYASDYSKFDDMKK 83
Query: 179 VETP 190
V P
Sbjct: 84 VAMP 87
>SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)
Length = 504
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 38 MGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIE 157
M TQS+ + + E+ G K V K K+K YAI +E
Sbjct: 389 MAMTTQSKVAGMELEVCKGRGKKRVCKKQKQKWTYAIPLE 428
>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
Length = 901
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 71 LSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKDFED 226
L K+IIW VL+Y K+ Y ++ D + + P C +D ED
Sbjct: 679 LQKDIIWTSENLQVLRYDKDGH-YHCHYDSEDENKHPDIPCCHYSNHEDDED 729
>SB_52697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 47 VTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLC 196
V Q+R + K I GY ++ ++ EAY ID+ L ++Q+ C
Sbjct: 24 VCQARRTPSIKVCIGGYETARIIA-RRDTEAYRIDVHQLGKLQQLTLRSC 72
>SB_32158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 139 LCD*H*KPGYRGTSRDAALQRLPS 210
LC PGYR +RD L R+PS
Sbjct: 28 LCRTRKNPGYRSVTRDEKLPRVPS 51
>SB_9908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 139 LCD*H*KPGYRGTSRDAALQRLPS 210
LC PGYR +RD L R+PS
Sbjct: 28 LCRTRKNPGYRSVTRDEKLPRVPS 51
>SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14)
Length = 441
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 299 LKDRSVGEMDICWVKRLGCLSLSCYLRNP*DGRRCR 192
++DRS+ + +C + L C +RN DG+RCR
Sbjct: 309 VQDRSI-RLKMCSTRNLNLNFQICPMRNLSDGQRCR 343
>SB_6692| Best HMM Match : WD40 (HMM E-Value=0.0056)
Length = 272
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 335 SPSLDIVEESSWLKDRSVGEMDIC 264
SPSLD +E +++ D + GEM C
Sbjct: 16 SPSLDKIEPATYPMDEAYGEMGSC 39
>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 1431
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 70 LVQRNYLGLQIQECFEVFERKGSLC 144
LV + GL +Q+CF F++KG C
Sbjct: 931 LVFKTIKGLMLQKCFPGFKQKGFNC 955
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 116 KYSKEKEAYAIDIENLDT 169
K+SKEK A+A ++E+L+T
Sbjct: 399 KFSKEKRAWADEVESLET 416
>SB_57773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 26.2 bits (55), Expect = 7.5
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +3
Query: 135 KPMRLTLKTWIPWNK 179
+P+R+ L++W+PW +
Sbjct: 21 RPVRMRLQSWLPWQR 35
>SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 676
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -2
Query: 314 EESSWLK--DRSVGEMDICWVKRLGCLS 237
E W K DR + EM+ W+ RLG LS
Sbjct: 423 EADDWSKSMDRHLEEMESSWLHRLGFLS 450
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 104 KNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKDFEDNMKD---SNTPTA*PNKCP 274
KN + + + Y + + + + ++ +C A +K FE N+K+ N PT N P
Sbjct: 707 KNCSEEMRADDEYVVSLWQHEVMRVMKDRVCRASDVKWFEKNLKNIVKENFPTLPANSPP 766
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,050
Number of Sequences: 59808
Number of extensions: 232034
Number of successful extensions: 593
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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