Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0529X.Seq
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifyi... 71 2e-13
U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifyi... 63 6e-11
Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical pr... 46 8e-06
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z77670-4|CAB01249.2| 439|Caenorhabditis elegans Hypothetical pr... 27 5.0
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 27 5.0
AF325178-1|AAG49583.1| 439|Caenorhabditis elegans CEH-32 protein. 27 5.0
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr... 26 6.6
>U58730-1|AAC48058.1| 514|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 2 protein.
Length = 514
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQV 181
EI+ L G +++G+ TQ+RTSYL EI+WG+RF+ ++ Y KE Y ID V V
Sbjct: 331 EIIAILEGVVESVGSTTQARTSYLPSEILWGHRFEKLVHYKKENGQYNIDFGKFHNVYSV 390
Query: 182 ETPLCSACRLK 214
TP CSA ++
Sbjct: 391 NTPTCSAAEIE 401
>U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 1 protein.
Length = 505
Score = 62.9 bits (146), Expect = 6e-11
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQV 181
EI+V L G ++ G Q++TSYL E++WG+RF+ ++ Y + +Y ID + + V
Sbjct: 325 EIIVLLEGIVESTGMTAQAKTSYLPSEVLWGHRFRKLVTYQRSNGSYQIDYDLFHSTYPV 384
Query: 182 ETPLCSACRLKDFEDNMKD 238
TP S + N+KD
Sbjct: 385 RTPAMSPAEFYSSKPNLKD 403
>Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical
protein K04G11.5 protein.
Length = 374
Score = 46.0 bits (104), Expect = 8e-06
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQV 181
E+++++ G + G Q+RTS+L EI+WGY+FK ++ +++ Y + D E+V
Sbjct: 290 ELIMTVEGIVEATGMTFQARTSFLPDEILWGYKFKPMVLMNEKLSKYEVHYSFFDQTERV 349
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical
protein F52G2.2a protein.
Length = 1319
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIW---GYRFKNVLKYSKEKEAYAID 151
EI+ T KN+GA + + LS +IW G+ K L EK Y+ D
Sbjct: 723 EILSPGTKDQKNLGASMTEKPASLSTTVIWRNNGFIVKAYLIMKPEKLIYSED 775
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical
protein F52G2.2b protein.
Length = 1129
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIW---GYRFKNVLKYSKEKEAYAID 151
EI+ T KN+GA + + LS +IW G+ K L EK Y+ D
Sbjct: 533 EILSPGTKDQKNLGASMTEKPASLSTTVIWRNNGFIVKAYLIMKPEKLIYSED 585
>Z77670-4|CAB01249.2| 439|Caenorhabditis elegans Hypothetical
protein W05E10.3 protein.
Length = 439
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 92 GYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKDFEDNMKDSNTP 250
G FKN + +++ A A + +N+ VE +T + DFED+M DS +P
Sbjct: 230 GNWFKN--RRQRDRAAAAKNKQNIIGVELKKTSSDMSDSDDDFEDSMTDSPSP 280
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 26.6 bits (56), Expect = 5.0
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +2
Query: 29 SKNMGAVTQSRTSYLSKEIIWGYRFKN-VLKYSKEKEAYAIDIENLDTVEQVETP--LCS 199
S+ + T S L+KE + +N +LK +KE+ +E L+ E +E P L
Sbjct: 1168 SQTVQESTVSPPKQLTKEEEQFKKLQNDLLKQAKER------LEALEMSEDMEKPRRLED 1221
Query: 200 ACRLKDFED---NMKDSNTPTA*P 262
L+D+ D N +D NTPT P
Sbjct: 1222 TVNLEDYGDDQENQEDENTPTNFP 1245
>AF325178-1|AAG49583.1| 439|Caenorhabditis elegans CEH-32 protein.
Length = 439
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 92 GYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKDFEDNMKDSNTP 250
G FKN + +++ A A + +N+ VE +T + DFED+M DS +P
Sbjct: 230 GNWFKN--RRQRDRAAAAKNKQNIIGVELKKTSSDMSDSDDDFEDSMTDSPSP 280
>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
protein F59F3.5 protein.
Length = 1199
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 26 SSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVE 175
S N+ T Y E I + + Y E Y ID+ENL+ +E
Sbjct: 808 SLNNLKRATDEYQKYTVSEKINNLPVEERIDYLTYNEDYEIDLENLEILE 857
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,734,289
Number of Sequences: 27780
Number of extensions: 173726
Number of successful extensions: 479
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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