Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0529X.Seq
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   7.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   9.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 308 SSWLKDRSVGEMDICWVKRLGCL 240
           + W     +G  D+C V+R   L
Sbjct: 296 NGWYMSTEIGSRDLCDVQRYNLL 318


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 76  GQVGCATLGNR 44
           G +GC TLG R
Sbjct: 213 GLIGCLTLGRR 223


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 101 ICSPR*FLWTSRMCDSG*PL 42
           +CSP   ++TS  C S  PL
Sbjct: 35  VCSPDLSVFTSPACGSETPL 54


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = +2

Query: 2   EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWG 94
           +I+ ++   +       Q++T+Y++KE+  G
Sbjct: 189 DIIRNMVPENLVQACFQQAQTTYVTKEVATG 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,073
Number of Sequences: 438
Number of extensions: 2037
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)