Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0529X.Seq
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20780.1 68417.m03017 calcium-binding protein, putative simil...    29   0.87 
At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putativ...    29   1.2  
At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putativ...    27   2.7  
At1g06140.1 68414.m00645 pentatricopeptide (PPR) repeat-containi...    27   2.7  
At1g67930.1 68414.m07757 Golgi transport complex protein-related...    27   4.6  
At2g27900.1 68415.m03382 expressed protein                             26   6.1  
At1g79190.1 68414.m09233 expressed protein                             26   6.1  
At1g32330.1 68414.m03983 heat shock transcription factor family ...    26   6.1  
At2g39330.1 68415.m04828 jacalin lectin family protein similar t...    26   8.1  
At1g78130.1 68414.m09105 transporter-related low similarity to s...    26   8.1  
At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ...    26   8.1  

>At4g20780.1 68417.m03017 calcium-binding protein, putative similar
           to SP|Q09011 Calcium-binding protein CAST {Solanum
           tuberosum}; contains INTERPRO:IPR002048 calcium-binding
           EF-hand domain
          Length = 191

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 211 ETAGAAERRLDLFHGIQVFNVNRIGFLFFRILQNILESV 95
           + + AAE   DL    +VF+ N  GF+  R LQ +L+ +
Sbjct: 110 DPSSAAENESDLAEAFKVFDENGDGFISARELQTVLKKL 148


>At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putative /
           proton pump 2, putative / proton-exporting ATPase,
           putative strong similarity to SP|P19456 ATPase 2, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type; contains Pfam profile PF00690:
           Cation transporter/ATPase, N-terminus
          Length = 948

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 31  KEHGSGYPESHILLVQRNYLGLQIQECFEVFERKGS 138
           K++G    E+   L QR   GLQ +E   +F  KGS
Sbjct: 864 KDYGKEEREAQWALAQRTLHGLQPKEAVNIFPEKGS 899


>At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putative /
           proton pump 1, putative / proton-exporting ATPase,
           putative strong similarity to SP|P20649 ATPase 1, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type; contains Pfam profile PF00690:
           Cation transporter/ATPase, N-terminus
          Length = 949

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 31  KEHGSGYPESHILLVQRNYLGLQIQECFEVFERKGS 138
           K++G G  E+     QR   GLQ +E   +F  KGS
Sbjct: 864 KDYGIGEREAQWAQAQRTLHGLQPKEDVNIFPEKGS 899


>At1g06140.1 68414.m00645 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 558

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 83  IIWGYRFKNVLKYSKEKEAYAI 148
           ++WG   K  LKYSK+ E + +
Sbjct: 176 VLWGVLMKGYLKYSKDPEVFRL 197


>At1g67930.1 68414.m07757 Golgi transport complex protein-related
           similar to golgi transport complex protein (GTC90)
           GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
           transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
          Length = 832

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 241 KHPNRLTQQMSISPTDLSLSQEDSSTISKLGDSLQ 345
           +HP  L Q  S+S  D+SLS   SS +S L  S++
Sbjct: 104 RHPELLAQLSSLSHADVSLSSLRSS-VSSLQSSIR 137


>At2g27900.1 68415.m03382 expressed protein
          Length = 1124

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 95  YRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKD 217
           Y +  ++ ++ EKEA  +   +L T + V++   S+C  +D
Sbjct: 413 YSYHEIMSFTPEKEAEILVSPSLATTQMVDSVTGSSCDPQD 453


>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 104  KNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKDFEDNMKD 238
            + V+  +K +EAY  + E  +T+E+V     S  +LKD+ +   D
Sbjct: 981  EGVVALAKVEEAYRAETETKETIEEV-IEFASFYQLKDYMNASDD 1024


>At1g32330.1 68414.m03983 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 485

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 232 ERLKHPNRLTQQMS-ISPTDLSLSQED 309
           ++ KH + LTQQM  +SP  L LS+++
Sbjct: 458 DKTKHMDNLTQQMGLLSPETLDLSRQN 484


>At2g39330.1 68415.m04828 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767, myrosinase binding protein
           [Brassica napus] GI:1711296; contains Pfam profile
           PF01419 jacalin-like lectin domain
          Length = 459

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 31  KEHGSGYPESHILLVQRNYLGLQI 102
           KE    YP+ HI+ V+ NY G+ +
Sbjct: 66  KEFVLQYPDEHIIAVEGNYRGVAL 89


>At1g78130.1 68414.m09105 transporter-related low similarity to
           spinster type III [Drosophila melanogaster] GI:12003974;
           contains Pfam profile: PF00083 major facilitator
           superfamily protein
          Length = 490

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 301 GLKIGLLAKWTFVGSSGWGV*VFHVIFEILETAGAAER 188
           GL   L+A  TF+G  GW V  FH++  I    G   R
Sbjct: 147 GLCSVLIAPLTFMGIPGWRV-AFHIVGVISVIVGVLVR 183


>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
           profiles PF04677: Protein similar to CwfJ N terminus 1,
           PF04676: Protein similar to CwfJ N terminus 2
          Length = 692

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 16  LNRFFKEHGSGYPE 57
           LN + KE+G+GYPE
Sbjct: 117 LNPYLKENGTGYPE 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,330,915
Number of Sequences: 28952
Number of extensions: 162334
Number of successful extensions: 436
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)