Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0528.Seq
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    29   0.55 
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   2.2  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   2.9  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    27   2.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   2.9  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   5.1  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   6.8  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    25   9.0  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   IVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVL 115
           I VSLT S+     +  ++TS+  + + WGY+   VL
Sbjct: 231 IAVSLTSSTAYATNILSAQTSFYKQNLSWGYKILIVL 267


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 229 HERLKHPNRLTQQMSISPTDLSLSQEDSSTISKLGDS 339
           HE+L HP    +   I     SLSQ  SS +++LG S
Sbjct: 313 HEKL-HPGTFVRSQKIPAIKASLSQRVSSVMTELGVS 348


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = +1

Query: 247 PNRLTQQMSISPTDLSLSQEDSSTISKL-----GDSLPSSPTLNRTATQRSFGWNF--RR 405
           P R+++ +  +P D +   E SS  S++      D L  +  L +T  +    W+F  + 
Sbjct: 232 PERVSRDIEFAPLDSARPSESSSPYSEVDSAEEDDELFQNYVLQQTRKESKL-WSFIKKV 290

Query: 406 FYPEKYVNY 432
           F+  KY NY
Sbjct: 291 FHDIKYANY 299


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 280 PTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRRFYP 414
           P    L +   + +  +  + P +PT  +     SF +NF +FYP
Sbjct: 77  PDVAELGRSTWTFLHAMAANFPKNPTPTQQNDMSSFLYNFSKFYP 121


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 16  LNRFFKEHGSGYPESHILLVQRNYLGLQIQECFEVFERKGSL 141
           +N+ FK HG    + ++ L   +Y+GL  + C +  ++  SL
Sbjct: 275 INQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQWSDKARSL 316


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 RLTQQMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFR 402
           RL +  SI P D+   Q  SS       ++P+  TL R    RS  ++FR
Sbjct: 270 RLYRSPSI-PNDVEQPQPQSSRSRPRSSTIPTQRTLERLRENRSSIFSFR 318


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +1

Query: 238 LKHPNRLTQQMSISP-----TDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRS 384
           LK+P R    +  SP     T   L+    ST+S+   S P+SPT N+ +   S
Sbjct: 23  LKNPVRFRPAVVSSPSVPEGTYTVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSS 76


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 642 TLNVIFLRLHSHYVC*TI----PRQSEFVWMSKHLTEASAYISVP 520
           T N++F R+H  Y C +     P +S   W+ K   E   ++ +P
Sbjct: 379 TKNLLFTRIHKEYPCDSFFPFEPAESS-DWVRKAHPELEKFVGIP 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,377
Number of Sequences: 5004
Number of extensions: 68148
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)