Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0528.Seq
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92...    30   2.3  
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38...    30   2.3  
08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011     29   5.4  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   5.4  

>12_01_0121 -
           920988-921296,921556-921620,921874-921923,922009-922106,
           923832-923867,925351-925731,925839-926324,926471-926647
          Length = 533

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 405 SPKVPSKAPLGGSSVQSWT*RQRIAEFRYC 316
           SP  PS+A  G    +SWT +Q+I +   C
Sbjct: 8   SPVTPSEAEAGAEDYESWTLKQKIEDLVNC 37


>03_01_0046 -
           384444-384460,384649-384770,385144-385301,385379-385479,
           385748-385823,385983-386093,386165-386356,386729-387024,
           388299-388497
          Length = 423

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +2

Query: 2   EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGY-RFKNVL-KYSKEKEAYAIDIENLDTVE 175
           EIV + TGSSKN       R +  S  +I  Y RF  V  + +KE++++      +DT  
Sbjct: 122 EIVKNGTGSSKNHAIALPERVNPTSLSLILDYCRFHQVPGRSNKERKSFDEKFVRIDTER 181

Query: 176 QVE-TPLCSACRLKDFED 226
             E T    + +LK   D
Sbjct: 182 LCELTSAADSLQLKPLVD 199


>08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011
          Length = 508

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 301 GLKIGLLAKWTFVGSSGWGV*VFHVIFEILETAGAAER 188
           GL   +LA  TF+G +GW +  FHV+  I  T G   R
Sbjct: 148 GLFSIMLASTTFMGIAGWRI-AFHVVALISVTVGILVR 184


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 265 VGSSGWGV*VFHVIFEILETAGAAERRLDLFHGIQVF 155
           +  SGWG   F +   +   +   E+RLDLFH ++++
Sbjct: 150 LSESGWGE--FEIAITLYFHSDVCEKRLDLFHQLKLY 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,284,800
Number of Sequences: 37544
Number of extensions: 417798
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)