Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0528.Seq
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9469| Best HMM Match : IRK (HMM E-Value=0) 59 4e-09
SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20) 56 2e-08
SB_35031| Best HMM Match : IRK (HMM E-Value=2.2e-06) 49 5e-06
SB_50538| Best HMM Match : Moricin (HMM E-Value=4.5) 29 3.1
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) 29 3.1
SB_399| Best HMM Match : Glycos_transf_2 (HMM E-Value=0.96) 29 4.1
SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8) 29 4.1
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_23978| Best HMM Match : ERF (HMM E-Value=2) 28 7.2
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05) 28 9.5
>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
Length = 520
Score = 58.8 bits (136), Expect = 4e-09
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEA-YAIDIENLDTVEQ 178
E+V L G+ + G +TQ++TSY+ +EI+WGY FKN L ++ K + ++ + D V
Sbjct: 342 ELVAILEGTVEATGMLTQAKTSYIGEEILWGYEFKNTLDHTSWKAGRFRVNYSHFDRVVP 401
Query: 179 VETPLCSA 202
V+TP SA
Sbjct: 402 VDTPRVSA 409
>SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)
Length = 610
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKE-AYAIDIENLDTVEQ 178
E+V+ L G ++ G TQ+RTSY++ EI WG+ F ++ Y K AY ID
Sbjct: 471 EVVLILEGIVESTGMTTQARTSYIADEIHWGHNFTELVTYDCFKNGAYHIDFSRFHDTYP 530
Query: 179 VETPLCSACRL 211
V+TP CSA L
Sbjct: 531 VDTPRCSAREL 541
>SB_35031| Best HMM Match : IRK (HMM E-Value=2.2e-06)
Length = 127
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 2 EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSK-EKEAYAIDIENLDTVEQ 178
EIV+ L G + G TQ +TSYLS+EI+WG+ F V S + + YA D D +++
Sbjct: 24 EIVIVLDGIVEATGMNTQPKTSYLSQEILWGHDFLQVADQSPFDVQYYASDYSKFDDMKK 83
Query: 179 VETP 190
V P
Sbjct: 84 VAMP 87
>SB_50538| Best HMM Match : Moricin (HMM E-Value=4.5)
Length = 173
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 253 RLTQQMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNR 366
RL Q + SL++ED T S+L ++ SP LNR
Sbjct: 132 RLHQSRAAKNISASLAREDGETGSRLAQAIIPSPLLNR 169
>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
Length = 404
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 241 KHPNRLTQQMSISPTDLSLSQEDSSTISKLGDSLPSSP 354
K N+ M S DLS +DSS ++KL S P P
Sbjct: 261 KQKNKTDIPMQTSKNDLSPMSQDSSKVTKLKRSTPEPP 298
>SB_399| Best HMM Match : Glycos_transf_2 (HMM E-Value=0.96)
Length = 488
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 377 WVAVLFRVGLDGRESPSLDIVEES-SWLKDRSVGEMDICW 261
W+ ++F GL R LDI++ S SWL+ VG M W
Sbjct: 418 WINIMFSPGLFARNRYGLDILKHSQSWLQ---VGGMGSSW 454
>SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)
Length = 504
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 38 MGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIE 157
M TQS+ + + E+ G K V K K+K YAI +E
Sbjct: 389 MAMTTQSKVAGMELEVCKGRGKKRVCKKQKQKWTYAIPLE 428
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 518 LGTLM*ADASVKCLLIHTNSDCLGIVQHT*CEWSLRK 628
+GTL+ CL H +DC G+ H C+ +K
Sbjct: 11 IGTLLILAGLADCLYCHQETDCFGVYPHC-CDGHCKK 46
>SB_23978| Best HMM Match : ERF (HMM E-Value=2)
Length = 282
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 250 NRLTQQMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRR 405
N + ++ + P DL L + + S ++K + +P++PT + T+ FRR
Sbjct: 126 NLQSSKLLLIPDDLPLDEYEKSLLAKGVNFVPTTPTTDYFTTKEDMEKFFRR 177
>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
Length = 901
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 71 LSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQVETPLCSACRLKDFED 226
L K+IIW VL+Y K+ Y ++ D + + P C +D ED
Sbjct: 679 LQKDIIWTSENLQVLRYDKDGH-YHCHYDSEDENKHPDIPCCHYSNHEDDED 729
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,643,668
Number of Sequences: 59808
Number of extensions: 486455
Number of successful extensions: 1114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -