Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0528.Seq
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifyi...    71   9e-13
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    63   2e-10
Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    31   0.90 
U61945-5|AAB03128.1|  517|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U23179-12|AAN63445.1|  224|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical p...    28   8.4  

>U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 2 protein.
          Length = 514

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +2

Query: 2   EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQV 181
           EI+  L G  +++G+ TQ+RTSYL  EI+WG+RF+ ++ Y KE   Y ID      V  V
Sbjct: 331 EIIAILEGVVESVGSTTQARTSYLPSEILWGHRFEKLVHYKKENGQYNIDFGKFHNVYSV 390

Query: 182 ETPLCSACRLK 214
            TP CSA  ++
Sbjct: 391 NTPTCSAAEIE 401


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/79 (34%), Positives = 44/79 (55%)
 Frame = +2

Query: 2   EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQV 181
           EI+V L G  ++ G   Q++TSYL  E++WG+RF+ ++ Y +   +Y ID +   +   V
Sbjct: 325 EIIVLLEGIVESTGMTAQAKTSYLPSEVLWGHRFRKLVTYQRSNGSYQIDYDLFHSTYPV 384

Query: 182 ETPLCSACRLKDFEDNMKD 238
            TP  S       + N+KD
Sbjct: 385 RTPAMSPAEFYSSKPNLKD 403


>Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical
           protein K04G11.5 protein.
          Length = 374

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/60 (31%), Positives = 36/60 (60%)
 Frame = +2

Query: 2   EIVVSLTGSSKNMGAVTQSRTSYLSKEIIWGYRFKNVLKYSKEKEAYAIDIENLDTVEQV 181
           E+++++ G  +  G   Q+RTS+L  EI+WGY+FK ++  +++   Y +     D  E+V
Sbjct: 290 ELIMTVEGIVEATGMTFQARTSFLPDEILWGYKFKPMVLMNEKLSKYEVHYSFFDQTERV 349


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 253  RLTQQMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGW 393
            ++T  ++   +  + SQ D   + KL +SLP     N T TQ+  GW
Sbjct: 1509 QITDDITAGKSRTTFSQ-DGFPLDKLKESLPEDEKSNLTVTQKDVGW 1554


>U61945-5|AAB03128.1|  517|Caenorhabditis elegans Hypothetical
           protein C49C8.1 protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +1

Query: 256 LTQQMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRRFYPEKYVNYG 435
           +T++ S      +L  +  ST SK      S P LNR A Q     NF    P K ++  
Sbjct: 191 VTKKESKISKSKTLPSKGPSTKSKDLKPGRSKPILNRKAEQMKIKKNFNMLIPPKSIDQS 250

Query: 436 QEQKELNV 459
           Q   E  V
Sbjct: 251 QRTAEEKV 258


>U23179-12|AAN63445.1|  224|Caenorhabditis elegans Hypothetical
           protein C27D6.4a protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 169 RGTSRDAALQRLPSQGFRR*HERLKHPNRLTQQMSISPTDLSLSQEDSSTISKLGDSLPS 348
           RG    AA Q+L ++   + HE     + +T Q   +  DL LS E+  T+ + G S+P 
Sbjct: 87  RGMGLAAAQQQLKARN--KMHEMAIRQHLITDQNITANGDLVLSAEERRTLVQEGYSIPQ 144

Query: 349 SPTLNRT 369
              L ++
Sbjct: 145 KYPLTKS 151


>Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.11 protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 271 SISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSF-GWNFRRFYPE 417
           S++  +  L QE  S  SKLGD +PS  T      ++ F G     F PE
Sbjct: 513 SVNLRESVLKQEIESRFSKLGDDVPSKKTFPEPKFKKVFLGRPPHGFLPE 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,786
Number of Sequences: 27780
Number of extensions: 378100
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)