Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0528.Seq
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   4.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   4.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   4.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.4  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 346 SSPTLNRTATQRSFGWNFRRFYPEKY-VNYGQEQKELNVLKQQM 474
           S+P  N+T  + +  WN   F   KY + + +  ++  +L+  M
Sbjct: 32  STPDNNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWM 75


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 383 LLWVAVLFRVGLDGRESPSLDIVEESSWLKDRSVGEMDICWV 258
           +++V + +R+G+ G  S   ++V  +  LKD+S   M + WV
Sbjct: 151 VIFVTINYRLGILGFLSTEDEVVPGNMGLKDQS---MALRWV 189


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 383 LLWVAVLFRVGLDGRESPSLDIVEESSWLKDRSVGEMDICWV 258
           +++V + +R+G+ G  S   ++V  +  LKD+S   M + WV
Sbjct: 22  VIFVTINYRLGILGFLSTEDEVVPGNMGLKDQS---MALRWV 60


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 383 LLWVAVLFRVGLDGRESPSLDIVEESSWLKDRSVGEMDICWV 258
           +++V + +R+G+ G  S   ++V  +  LKD+S   M + WV
Sbjct: 151 VIFVTINYRLGILGFLSTEDEVVPGNMGLKDQS---MALRWV 189


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 493 PKTDTVTSVASKHSTLFV 440
           P T T T+++ KH  +FV
Sbjct: 390 PSTTTSTTISQKHIKVFV 407


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 720 LKHLNTQQTLLKLST 764
           LKHLNT+ TL   ST
Sbjct: 299 LKHLNTEHTLDDRST 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,679
Number of Sequences: 438
Number of extensions: 4249
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)