Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0528.Seq
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot...    29   2.6  
At4g20780.1 68417.m03017 calcium-binding protein, putative simil...    29   3.4  
At1g02110.1 68414.m00137 proline-rich family protein contains pr...    29   3.4  
At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putativ...    29   4.5  
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)...    29   4.5  
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)...    29   4.5  
At3g60320.1 68416.m06742 expressed protein contains Pfam profile...    28   5.9  

>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 571

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 304 EDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRRFYPEKYVNYGQEQKELNVL 462
           ED   + +  DS+ +   +N      S+ +N +   P+K V Y +E++E NV+
Sbjct: 155 EDLKLVGRCIDSVSAKILVNPETITWSYTFNRKLSGPDKIVEYHREKREENVI 207


>At4g20780.1 68417.m03017 calcium-binding protein, putative similar
           to SP|Q09011 Calcium-binding protein CAST {Solanum
           tuberosum}; contains INTERPRO:IPR002048 calcium-binding
           EF-hand domain
          Length = 191

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 211 ETAGAAERRLDLFHGIQVFNVNRIGFLFFRILQNILESV 95
           + + AAE   DL    +VF+ N  GF+  R LQ +L+ +
Sbjct: 110 DPSSAAENESDLAEAFKVFDENGDGFISARELQTVLKKL 148


>At1g02110.1 68414.m00137 proline-rich family protein contains
           proline-rich domain, INTERPRO:IPR000694
          Length = 679

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 280 PTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRRFYP 414
           P  LS S   SS  +    +   + T +R+ +Q S  WN+  FYP
Sbjct: 109 PHILSDSSPSSSPATSFYPTAHQNSTYSRSPSQASSVWNWENFYP 153


>At4g30190.1 68417.m04292 ATPase 2, plasma membrane-type, putative /
           proton pump 2, putative / proton-exporting ATPase,
           putative strong similarity to SP|P19456 ATPase 2, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 2) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type; contains Pfam profile PF00690:
           Cation transporter/ATPase, N-terminus
          Length = 948

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 31  KEHGSGYPESHILLVQRNYLGLQIQECFEVFERKGS 138
           K++G    E+   L QR   GLQ +E   +F  KGS
Sbjct: 864 KDYGKEEREAQWALAQRTLHGLQPKEAVNIFPEKGS 899


>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 526

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +1

Query: 232 ERLKHPNRLTQQMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRRFY 411
           E++ HP    +    S  +    QED+ +       L ++ ++N++  + S    FR F 
Sbjct: 48  EKVSHPEMANEDRQQSKPEEKTLQEDNCSDCFTHQYLSAASSMNKSCIETSNASTFREFL 107

Query: 412 PEK 420
           P +
Sbjct: 108 PSR 110


>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 608

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +1

Query: 232 ERLKHPNRLTQQMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRRFY 411
           E++ HP    +    S  +    QED+ +       L ++ ++N++  + S    FR F 
Sbjct: 130 EKVSHPEMANEDRQQSKPEEKTLQEDNCSDCFTHQYLSAASSMNKSCIETSNASTFREFL 189

Query: 412 PEK 420
           P +
Sbjct: 190 PSR 192


>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
           PF04782: protein of unknown function (DUF632), PF04783:
           protein of unknown function (DUF630)
          Length = 796

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +1

Query: 175 TSRDAALQRLPSQGFRR*HERLKH-PN-RLTQQMSISPTDLSLSQEDSSTISKLGDSLPS 348
           TS   A  + PS      + R K  P  RL   +S S    S   E S+ +  L  S   
Sbjct: 106 TSPSVASSKQPSVMSTSSNRRRKQQPKPRLPHILSESSPSSSPRSERSNFMPNLYPSAYQ 165

Query: 349 SPTLNRTATQRSFGWNFRRFYP 414
           + T + T +  S  WN+  FYP
Sbjct: 166 NSTYSATPSHASSVWNWENFYP 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,249
Number of Sequences: 28952
Number of extensions: 349834
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)