Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0527.Seq
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1015 - 21734381-21736534 30 2.0
08_02_1019 - 23657175-23658047 29 2.6
11_04_0249 + 15331546-15331775,15332474-15332523,15332979-15333202 28 8.0
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 28 8.0
07_01_0975 + 8223269-8224354 28 8.0
07_01_0446 - 3371829-3372132,3374691-3375673 28 8.0
07_01_0445 - 3365244-3366227 28 8.0
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 28 8.0
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 28 8.0
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 8.0
02_03_0293 - 17372071-17372217,17372301-17372471,17373334-173734... 28 8.0
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = -2
Query: 673 SWSPLLLFCWARSKPARAVT--SALGWCNFTSQPLTVPSQSNRQTVTLFPHNTRQSRAFV 500
SW+ ++ +P A++ SA+ C + +T+ S L H RQ +
Sbjct: 120 SWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLASVLGCCAECLDLHGARQLHGHI 179
Query: 499 LKG---SNYIMGTARIDV 455
K SN I+GTA +DV
Sbjct: 180 AKRDFQSNVILGTALVDV 197
>08_02_1019 - 23657175-23658047
Length = 290
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 188 FREGESRRAPSAGPMLPVAAVTNAPRALFHIPTHHQL-P*IRSPAAVEHSQQ 340
F ES GP P +AV+ A + + HHQ P R+PA H QQ
Sbjct: 108 FHRKESESPTGVGPAEP-SAVSPAAISAYGASPHHQFSPYYRTPAGYLHHQQ 158
>11_04_0249 + 15331546-15331775,15332474-15332523,15332979-15333202
Length = 167
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 522 VLCGNRVTVCLFDCDGTVSGCEVKLHQPSAEV 617
V+ G R + DCD +G E+ +H P AE+
Sbjct: 122 VIRGGRCIIA-GDCDADRAGSEIDVHDPDAEI 152
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 674 FMVTAASLLLGEIEAGSGSHF 612
F + S+++G+I AG GSHF
Sbjct: 460 FSIRRRSIIVGQITAGDGSHF 480
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 249 TAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 88
T GS G + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 69 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQHK 173
NF++ C+ + E+P+VV ++RL A H+
Sbjct: 101 NFHAGCLRLAAELPAVVLSFDYRLAPEHRLPAAHE 135
>07_01_0445 - 3365244-3366227
Length = 327
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 45 GCSRLPPFNFYSMCMAVKLEIPSVVTLMEFRL 140
G R P NF++ C+ + E+P+VV ++RL
Sbjct: 90 GSGRWP--NFHAWCLRLAAELPAVVLSFDYRL 119
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Frame = -3
Query: 288 WVG--MWNSARGAL--VTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPS 124
W G +W G + A+ GS G G L +CVEP +P G+P
Sbjct: 297 WTGPEIWKDTAGKVDVFVASVGSGGTLTGVGRYLKMKNPSINIVCVEPSESPVISGGSPG 356
Query: 123 MSPQKGSPA 97
+G+ A
Sbjct: 357 PHKIQGTGA 365
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Frame = -3
Query: 288 WVG--MWNSARGA--LVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPS 124
W G +W G + A +G+ G G L ICVEP +P G PS
Sbjct: 179 WTGPEIWKDTAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPS 238
Query: 123 MSPQKG-SPASQPYTLN 76
+G P P L+
Sbjct: 239 RHKIQGMGPGFVPKNLD 255
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 134 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 244
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>02_03_0293 -
17372071-17372217,17372301-17372471,17373334-17373435,
17373803-17374216,17374369-17374512,17374634-17375647
Length = 663
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = -3
Query: 288 WVGMWNSARGALVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQK 109
W G+W+S ALV A G G ++ + SR + PG T SM +
Sbjct: 102 WRGVWHSVPLALVDAHLAPQGRGGGGVVAAVSR----VLAAHPGPFRCAHLTTTSMEAHR 157
Query: 108 GSPA 97
G A
Sbjct: 158 GEVA 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,726,481
Number of Sequences: 37544
Number of extensions: 448539
Number of successful extensions: 1440
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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