Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0527.Seq
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.67 
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      31   0.88 
SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)                        31   0.88 
SB_3663| Best HMM Match : MBT (HMM E-Value=0)                          31   1.2  
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                29   2.7  
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   4.7  
SB_11481| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = -3

Query: 276 WNSARGALVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 133
           W  AR  LV A T ++ PAD +L+ SPSR      CV    T  C +G
Sbjct: 745 WGRAR-TLVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = -3

Query: 285 VGMWNSARGALVTAATGSMGPADGALLLSPSRKHFLF-ICVEPGSTPRCPSGTPSMSPQK 109
           + + N  RG L T++ G       +  +S S    L  +   P ++ R P G+ S+SP  
Sbjct: 257 IALNNPLRGRLSTSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSPPGSGSLSPSV 316

Query: 108 GSPASQP-YTLNRN*TVAAVS-SRRNSPHTQKRVHRTE 1
            SP+  P +  N N +    S +   +PH++   +RT+
Sbjct: 317 FSPSPCPIWEENYNTSDDFASHAESKAPHSEINQYRTD 354


>SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = -3

Query: 285 VGMWNSARGALVTAATGSMGPADGALLLSPSRKHFLF-ICVEPGSTPRCPSGTPSMSPQK 109
           + + N  RG L T++ G       +  +S S    L  +   P ++ R P G+ S+SP  
Sbjct: 257 IALNNPLRGRLSTSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSPPGSGSLSPSV 316

Query: 108 GSPASQP-YTLNRN*TVAAVS-SRRNSPHTQKRVHRTE 1
            SP+  P +  N N +    S +   +PH++   +RT+
Sbjct: 317 FSPSPCPIWEENYNTSDDFASHAESKAPHSEINQYRTD 354


>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
          Length = 327

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 646 WARSKPARAVTSALGWCNFTSQPLTVPSQSNRQTVTLFPHNTRQS 512
           WAR   +R+++ A  WCNFT  PL  P  S+    +  P ++  S
Sbjct: 119 WARFD-SRSISPAR-WCNFTGHPLQPPDPSSSADSSYSPSDSAAS 161


>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -3

Query: 207 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 100
           L++P  K+F++ CV PG++ R P+  PS++    +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241


>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 498 KTKARDCRVLCGNRVTVCLFDCDG--TVSGCEVKLHQPSAE 614
           +TK R C  + G   TVC+F C+G   V G   +  QP+ E
Sbjct: 459 RTKTRKCTTVVG---TVCVFGCEGGRRVVGSTERRCQPTGE 496


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 168 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 82
           + P S P  PS +P+ +   GSP  QP++
Sbjct: 77  LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105


>SB_11481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 619 VTSALGWCNFTSQPLTVPSQSNRQ 548
           +TS  G CN  S PL +PS+++ Q
Sbjct: 1   LTSGAGRCNAISNPLRIPSRNHTQ 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,496,597
Number of Sequences: 59808
Number of extensions: 527759
Number of successful extensions: 1425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)