Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0527.Seq
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    29   2.2  
At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2...    29   2.9  
At5g67180.1 68418.m08469 AP2 domain-containing transcription fac...    27   8.9  
At3g29180.1 68416.m03657 expressed protein                             27   8.9  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -2

Query: 547 TVTLFPHNTRQSRAFVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVDTN*IKSLGNI 368
           T  LFP  ++   A +L+  N ++   +    + H N  E +Q    +++ +  K L N+
Sbjct: 232 TGNLFPTRSKYDEAMMLERRNMLLKMLKFGGNWKHINLEEDEQLCYNHIEIDIKKLLENL 291

Query: 367 G 365
           G
Sbjct: 292 G 292


>At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2.8)
            (GLUR9) plant glutamate receptor family, PMID:11379626
          Length = 947

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 586  SQPLT--VPSQSNRQTVTLFPHNTRQSRAFVLKGSNYIMGTARIDVVFNHSNASESD 422
            S P+T  +PS S  Q +   PH+  Q RAF L+  ++     R+     H    ESD
Sbjct: 885  SSPMTQYIPSPSTLQ-IAPRPHSPSQDRAFELRRVSFTPNEERLTTQTIHFEDEESD 940


>At5g67180.1 68418.m08469 AP2 domain-containing transcription
           factor, putative similar to (SP:P47927) Floral homeotic
           protein APETALA2. [Mouse-ear cress] {Arabidopsis
           thaliana}
          Length = 352

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 679 SASWSPLLLFCWARSKPARAVTSALGWCNFTSQPLTVPSQSNR 551
           SA+W P +L       PA+++   + W  F S   + PS S R
Sbjct: 31  SATWLPFVLPVTRNFFPAQSMEPGVRWSGFNSVGKSDPSGSGR 73


>At3g29180.1 68416.m03657 expressed protein
          Length = 513

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 188 FREGESRRAPSAGPMLPVAA-VTNAPRALFHIPTHHQLP*IRSPA 319
           F++ +   AP+  P  P+   +   PR + HI  H +LP I++ A
Sbjct: 268 FKDKKKSPAPNQCPYTPIGVDLFVCPRKIDHIAQHIELPNIKAEA 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,927,727
Number of Sequences: 28952
Number of extensions: 334553
Number of successful extensions: 946
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)