Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0526.Seq
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   140   2e-34
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.4  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    28   1.4  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   3.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.6  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   9.9  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   9.9  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  140 bits (338), Expect = 2e-34
 Identities = 62/85 (72%), Positives = 73/85 (85%)
 Frame = +2

Query: 254 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 433
           KV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR  RAKS
Sbjct: 92  KVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKS 151

Query: 434 MKFVDGLMIHSGDPCNDYVNTATRH 508
           MKF DG MIHSG P  D++++ATRH
Sbjct: 152 MKFADGFMIHSGQPAVDFIDSATRH 176



 Score =  137 bits (331), Expect = 2e-33
 Identities = 67/85 (78%), Positives = 73/85 (85%)
 Frame = +3

Query: 3   SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 182
           SKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGRR
Sbjct: 8   SKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRR 67

Query: 183 IRELTSVVQKRFNIPEQSVELYAER 257
           IRELT++VQKRF   E +VELYAE+
Sbjct: 68  IRELTALVQKRFKFAENTVELYAEK 92



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +1

Query: 508 LLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 651
           +LLRQGVLG+KVKIMLP   + K   KK  PD ++V +PK+E    +P
Sbjct: 177 VLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 353  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 508
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 262 SHLSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 158
           SHL    S+     +N F  T  SSR L PFS +T
Sbjct: 119 SHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 632 SSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPSTPCLRSNVW 501
           SS G ++ +     +    LPCWS G  +  L  ++  L    W
Sbjct: 110 SSFGEISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVMTTW 153


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 418  STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 507
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 416 GQRAKSMKFVDGLMIHSGDPCNDYVN 493
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 242 FYRLLWNVESLLYYGSQL 189
           FYRL W  + +LY  SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,070
Number of Sequences: 5004
Number of extensions: 58446
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)