Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0526.Seq
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 162 3e-40
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 36 0.030
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 31 0.85
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 30 2.0
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 29 2.6
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7) 29 3.4
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 3.4
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 3.4
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 3.4
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10) 29 4.5
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 29 4.5
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 4.5
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 6.0
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08) 28 7.9
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 162 bits (393), Expect = 3e-40
Identities = 75/87 (86%), Positives = 81/87 (93%)
Frame = +2
Query: 254 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 433
KVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLRFIMESGA+GCEVVVSGKLRGQRAKS
Sbjct: 90 KVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKS 149
Query: 434 MKFVDGLMIHSGDPCNDYVNTATRHCF 514
MKFVDGLM+H+G+P YV+TA RH +
Sbjct: 150 MKFVDGLMVHAGEPTTHYVDTAVRHVY 176
Score = 156 bits (378), Expect = 2e-38
Identities = 76/85 (89%), Positives = 81/85 (95%)
Frame = +3
Query: 3 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 182
SKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGRR
Sbjct: 6 SKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGRR 65
Query: 183 IRELTSVVQKRFNIPEQSVELYAER 257
IRELTSVVQKRF PE SVELYAE+
Sbjct: 66 IRELTSVVQKRFGFPEGSVELYAEK 90
Score = 85.4 bits (202), Expect = 4e-17
Identities = 37/49 (75%), Positives = 40/49 (81%)
Frame = +1
Query: 514 LRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 660
LRQGVLGIKVKIMLPWD GK GPKKP PD + + EPKDE VP +PTSE
Sbjct: 177 LRQGVLGIKVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSE 225
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 35.9 bits (79), Expect = 0.030
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 471 TLAMITSTLLPDIASQ-ARSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARA 641
T A L ++A + + + + VA GPAR PE TRPHPG GR A
Sbjct: 79 TSAQPDEQLAQELAQEPGKRHQEPARTPVAAGPARITSPEPPATRPHPGRVEAGRRLA 136
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +3
Query: 471 TLAMITSTLLPDIASQ-ARSTRNQGQNHVAV--GPARQERPEEATTRPHPGDRAQGRARA 641
T A L ++A + + R + VA PAR PE TRPHPG GR A
Sbjct: 8 TRAQPDDQLAQELAQEPGKPAREPARTPVAALPAPARVTSPEPPATRPHPGRVEAGRRLA 67
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 564 PARQERPEEATTRPHPGDRAQGRARA 641
PAR PE TRPHPG GR A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +3
Query: 471 TLAMITSTLLPDIASQ-ARSTRNQGQNHVAVGPA--RQERPEEATTRPHPGDRAQGRARA 641
T A L ++A + + R + VA PA R PE TRPHPG GR A
Sbjct: 783 TSAQPDEQLAQELAQEPGKQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLA 842
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 262 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 384
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
Length = 383
Score = 29.1 bits (62), Expect = 3.4
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +3
Query: 54 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 215
E+L R++ D YS E +TP +IMA R QSVL ++GR +LT Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230
Query: 216 FNIPEQSVELYA 251
F+ SVE +A
Sbjct: 231 FDDLADSVEQFA 242
>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 483 ITSTLLPDIASQ-ARSTRNQGQNHVAVG-PARQERPEEATTRPHPGDRAQGRARA 641
+T+ LL ++ A S +N HV + P R PE TRPHPG GR A
Sbjct: 159 LTNNLLKNLPKNLANSIKNL---HVRLWLPPRITSPEPPATRPHPGRVEAGRRLA 210
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 3.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 403 WQAAWSTCQINEVCRWTHDPLW 468
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 397 CIWQAAWSTCQINEVCRWTHDPLWRP 474
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 525 STRNQGQNHVAVGPARQERPEEATTRP 605
+++N + H + PA+QE+PE + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188
>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
Length = 548
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 243 LYAERWLLVVFALSPRPNL*DTSLSEVSLYVVLAMVFSVSSWNLVPVV 386
+YA+RW + F + +P+ V+L V+LA+ S W + P+V
Sbjct: 329 IYADRWYSIRFVMRRKPS------KRVTLRVILALWISGLIWAIPPLV 370
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 540 GQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPRADQRSAL 668
G + + + +E PEE RPHP RA R ++R+ L
Sbjct: 161 GSDSESDSESEEESPEEEKPRPHPVADEDERADVRRQEERTPL 203
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 555 AVGPARQERPEEATTRPHPGDRAQGRA 635
A AR PE TRPHPG GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 662 TSLVGSRGTGSSLGSVTRMWSGCGFFGPFLPCW 564
+S+ S G GSSLGS+ R W P W
Sbjct: 214 SSIASSLGLGSSLGSMGRDWGRMSTNSPSFQSW 246
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 230 LWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPH 102
LWN++ + + F + H+ C GG N D A GS+ H
Sbjct: 186 LWNIKDRVLERKYQGVTQGFYTIHS-CFGGVNQDFLASGSEDH 227
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 532 GIKVKIMLPWDQQGKNGPKKPQ-PDHILVTEPKDEPVPLEPTSEVRS 669
G+K+K+ML D+ G + P P+ P P + P E S +S
Sbjct: 1628 GLKIKLMLKKDRSGGSSPVSPRSPSPCEPRLPLESRSPFESNSSFQS 1674
>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
Length = 1167
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +3
Query: 234 SVELYAERWLLVVFALSPRPNL*DTSLSEVSLYVVLAMVFSVSSWNLVPVVVKLLYLASC 413
S L AER+L VVFA+ P L DT L+ + + F V+ + K LY C
Sbjct: 679 STLLTAERYLAVVFAMKPDRRL-DTKLARKLICSMYLGFFVVAILPYTLLREKYLYNNYC 737
Query: 414 V 416
V
Sbjct: 738 V 738
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,191,483
Number of Sequences: 59808
Number of extensions: 489036
Number of successful extensions: 1617
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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