Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0526.Seq
         (670 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   2.9  
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.        24   3.8  
AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.      24   3.8  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   6.6  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 404 QIQQLHNHGHQIP**NGEHHSKH 336
           Q QQ H H HQ     G+HH++H
Sbjct: 642 QQQQQHQH-HQAHQHQGQHHAQH 663


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 256 GGYSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPF 360
           GG     RYRPG ++  +  R  + T  L+   PF
Sbjct: 32  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 66


>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 256 GGYSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPF 360
           GG     RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +3

Query: 504  DIASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPR 647
            D+  Q R  R     + A   A Q+R  E    P P  R + R    R
Sbjct: 1048 DVLRQERLRRYNETRNAARRAATQQRQAERLPPPPPSPRTERRREVNR 1095


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,911
Number of Sequences: 2352
Number of extensions: 15587
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)