Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0526.Seq
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 153 8e-38
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 2.3
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 29 3.9
U28943-5|AAA68359.2| 435|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical ... 28 5.2
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 6.9
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 6.9
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 6.9
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 6.9
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 6.9
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 28 6.9
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 153 bits (372), Expect = 8e-38
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +2
Query: 254 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 433
KV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+VSGKLRGQRAK+
Sbjct: 92 KVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKA 151
Query: 434 MKFVDGLMIHSGDPCNDYVNTATRH 508
MKFVDGLMIHSG P NDY+ A RH
Sbjct: 152 MKFVDGLMIHSGHPVNDYIQQAVRH 176
Score = 132 bits (318), Expect = 3e-31
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +3
Query: 3 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 182
+KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GRR
Sbjct: 8 TKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRR 67
Query: 183 IRELTSVVQKRFNIPEQSVELYAER 257
I+ELTSVVQKRF E SVELYAE+
Sbjct: 68 IKELTSVVQKRFGFEEGSVELYAEK 92
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/57 (52%), Positives = 43/57 (75%)
Frame = +1
Query: 490 QHCYQTLLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 660
Q + + LRQGV+GIKVKIMLP+D +G+NGP+ PDH+ + EP++E +P EP S+
Sbjct: 171 QQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -1
Query: 361 ETENTIASTTYSETSDKLVS*RFGLGDSAKTTSSHLSAYNSTDCSGMLNRFCTTEVSSRI 182
+ T STT S T++ L S + + T++ S N+T+ + + TTE ++
Sbjct: 159 DMSTTRFSTTLSPTTELLTSPETLVSTDSSTSTEQTSPDNTTEIASPMETNTTTEATTTS 218
Query: 181 LRPFSPSTL 155
+ P S STL
Sbjct: 219 VEP-SVSTL 226
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 507 IASQARSTRNQGQNHVAVGPARQERPEEATTRP--HPGDRAQGRA 635
I Q + R Q GP RQ++P++ + +P PG + QG++
Sbjct: 550 IRQQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQS 594
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 72 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 233
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 72 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 233
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +3
Query: 105 RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAERWLLVVFALS 284
R TP+ + +R++S + RR R + +R ++ S L+VV + S
Sbjct: 19 RFTPLAKTKRTVVSRSRSRSASRARRSRSVGRPASRRISVRSVSTHTAKSPSLVVVISPS 78
Query: 285 PRPNL*DTSLSEVSLYVVLAMVFSVS 362
PR TS S V A SVS
Sbjct: 79 PRRRRSSTSRSSRRSVVRSASRGSVS 104
>U28943-5|AAA68359.2| 435|Caenorhabditis elegans Hypothetical
protein E04F6.6 protein.
Length = 435
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 458 IHSGDPCNDYVNTATRHCFSGKEY*ESRSKSCCRG 562
+H CN ++ T +HCF G + E + S C+G
Sbjct: 211 LHLEALCNRFLPTVRKHCFGGNKT-EEKYGSKCKG 244
>AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical
protein F52D1.1 protein.
Length = 903
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 168 EKGRRIRELTSVVQKRFNIPEQSVELYAERWLLVVF-ALSPRPN 296
+KG +E+ K +P+ + Y+E L+ VF L P+PN
Sbjct: 282 DKGGLSKEVLDADTKPRQVPQHNARFYSESGLIDVFITLGPQPN 325
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +1
Query: 592 PQPDHILVTEPKDEPVPL---EPTSE 660
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +1
Query: 592 PQPDHILVTEPKDEPVPL---EPTSE 660
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +1
Query: 592 PQPDHILVTEPKDEPVPL---EPTSE 660
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +1
Query: 592 PQPDHILVTEPKDEPVPL---EPTSE 660
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +1
Query: 592 PQPDHILVTEPKDEPVPL---EPTSE 660
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +1
Query: 592 PQPDHILVTEPKDEPVPL---EPTSE 660
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 635 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 534
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 635 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 534
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 150 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAE 254
+ S+ G+KG+ +REL + + K ++ E++ + AE
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAE 430
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 6 KKRKFVGDGVFKAELNEFLTRELAEDGY 89
KK F GDG F E E+ +DGY
Sbjct: 895 KKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 6 KKRKFVGDGVFKAELNEFLTRELAEDGY 89
KK F GDG F E E+ +DGY
Sbjct: 895 KKFSFKGDGEFFVSQREVFENEILDDGY 922
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,064
Number of Sequences: 27780
Number of extensions: 346684
Number of successful extensions: 1179
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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