Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0525.Seq
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.36 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.4  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   7.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +3

Query: 330 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 428
           P C  C    H  + CP+G +   T    N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 411 CYNCNKSGHISRNCPDGTK 467
           C  C    H  + CP GTK
Sbjct: 78  CGACGDIAHTVKYCPKGTK 96


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 79  EFSKPIAMSSSVCYKCNRTGHFAR 150
           +  KP+    +V Y   ++G+F+R
Sbjct: 165 DIGKPVVAEETVDYMLEKSGNFSR 188


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 493 PGLPXT*HVLVPSGQLREMWPDLLQL*QVCVADSRPP 383
           PGL      L+ SGQL  +  D     +   A+S+PP
Sbjct: 56  PGLAAVLQYLIRSGQLNIISSDHDDSDEEYAANSQPP 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,652
Number of Sequences: 438
Number of extensions: 3167
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)