Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0525.Seq
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 73 2e-13
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 71 9e-13
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 67 8e-12
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 64 1e-10
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 58 4e-09
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 56 2e-08
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 53 1e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 50 2e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 50 2e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 49 2e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 9e-06
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 9e-06
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 39 0.002
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 39 0.003
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.006
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 37 0.010
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 37 0.010
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.010
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.030
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.053
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 35 0.053
At3g31950.1 68416.m04046 hypothetical protein 34 0.070
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.070
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 34 0.093
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.12
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.16
At5g47390.1 68418.m05840 myb family transcription factor contain... 33 0.21
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.21
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.28
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 32 0.28
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 32 0.28
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.37
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.50
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.50
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.50
At5g61670.2 68418.m07738 expressed protein 31 0.87
At5g61670.1 68418.m07737 expressed protein 31 0.87
At4g06479.1 68417.m00885 hypothetical protein 31 0.87
At5g47430.1 68418.m05844 expressed protein 30 1.1
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.1
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 30 1.1
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 30 1.1
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.1
At4g17410.1 68417.m02607 expressed protein 30 1.1
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.1
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.1
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.1
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.1
At1g22690.1 68414.m02835 gibberellin-responsive protein, putativ... 30 1.1
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 30 1.5
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 30 1.5
At1g34095.1 68414.m04227 expressed protein ; expression supporte... 30 1.5
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.0
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.0
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.0
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 2.0
At4g06526.1 68417.m00938 hypothetical protein 29 2.6
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 2.6
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 2.6
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.6
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.6
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 3.5
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.5
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 3.5
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 3.5
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 4.6
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 4.6
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 4.6
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 4.6
At2g33090.1 68415.m04057 expressed protein ; expression supporte... 28 4.6
At2g31850.1 68415.m03889 expressed protein 28 4.6
At5g61620.1 68418.m07732 myb family transcription factor contain... 28 6.1
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 28 6.1
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 28 6.1
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 28 6.1
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 6.1
At2g10050.1 68415.m01043 zinc knuckle (CCHC-type) family protein... 28 6.1
At1g03190.2 68414.m00297 DNA repair protein / transcription fact... 28 6.1
At1g03190.1 68414.m00296 DNA repair protein / transcription fact... 28 6.1
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 8.1
At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) cont... 27 8.1
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 413
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 414 YNCNKSGHISRNCP----------DGTKTCYVXGKPGHISRDAT 515
Y C +GH++R+C G+ C++ GK GH +R+ T
Sbjct: 255 YECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARECT 298
Score = 65.3 bits (152), Expect = 3e-11
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Frame = +3
Query: 270 CYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNCPEGGRESAT-- 404
CY C GH+A++C + CY C GH AR+C + G +
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 405 -QTCYNCNKSGHISRNCPD--------GTKTCYVXGKPGHISRDATRRGTSRS 536
TCY C GHI++ C G + CY G GH++RD RRG+ S
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSS 275
Score = 63.7 bits (148), Expect = 1e-10
Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 27/111 (24%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGR 392
CY C GH AR+C QS S CY+C + GH+A++C GGR
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 393 ESATQTCYNCNKSGHISRNCPD--------GTKTCYVXGKPGHISRDATRR 521
S CY C GH +R+C G TCY G GHI++ T +
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSK 242
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/46 (50%), Positives = 28/46 (60%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
CY+C TGH AR+C + G S SG KCF C + GHFAR+C
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 54.0 bits (124), Expect = 8e-08
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 35/120 (29%)
Frame = +3
Query: 270 CYRCNGTGHIAREC--------------AQSPDEPSCYNCNKTGHIARNCPE------GG 389
C+ C GH+A++C +S E CY C GH AR+C + GG
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 390 RESATQTCYNCNKSGHISRNCPDGT---------------KTCYVXGKPGHISRDATRRG 524
+ CY+C + GH++++C G+ CY+ G GH +RD + G
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 255
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCR 177
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/51 (43%), Positives = 27/51 (52%)
Frame = +1
Query: 109 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKKR 261
S CY C GH A+ CT + S G R C++C TGH ARDC +R
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRR 270
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Frame = +3
Query: 333 SCYNCNKTGHIARNCP----------EGGRESATQ-TCYNCNKSGHISRNCPD------- 458
+C+NC + GH+A++C GGR S + CY C GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSG 154
Query: 459 ----GTKTCYVXGKPGHISRDATRRGTSRSN 539
G + CY G+ GH+++D RG S N
Sbjct: 155 GGGGGGRPCYSCGEVGHLAKDC--RGGSGGN 183
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSR---DSGFNRQREKCFKCNRTGHFARDCKK 258
CY C GH A++C G +R G + C+ C GHFARDC++
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQ 213
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 103 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKK 258
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQ 147
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKKRL 264
CY C GHFAR+C Q G + G C+ C GH A+ C ++
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGG----GSTCYTCGGVGHIAKVCTSKI 243
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Frame = +3
Query: 372 NCPEGGRESATQTCYNCNKSGHISRNCPDGT----------------KTCYVXGKPGHIS 503
N E + C+NC + GH++++C G+ CY+ G GH +
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFA 142
Query: 504 RDATRRGTSRS 536
RD + G S
Sbjct: 143 RDCRQSGGGNS 153
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 106 SSVCYKCNRTGHFARECT 159
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 175 SRDSGFNRQREKCFKCNRTGHFARDC 252
SR SG N CF C GH A+DC
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDC 109
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 70.5 bits (165), Expect = 9e-13
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE----GGRE 395
D CY C GH+AR+C Q CY C GH AR+C + G
Sbjct: 164 DGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVR 223
Query: 396 S---ATQTCYNCNKSGHISRNCP---DGTKTCYVXGKPGHISRDATRRGT 527
S + TCY+C GHI+R+C ++ CY G GH++RD +RG+
Sbjct: 224 SGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGS 273
Score = 70.5 bits (165), Expect = 9e-13
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESA--TQTCYNCNKSGH 437
CY C G GHIAR+CA + +PS CY C +GH+AR+C + G CY C K GH
Sbjct: 232 CYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGH 290
Query: 438 ISRNC 452
+R C
Sbjct: 291 FAREC 295
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQSP----------DEPSCYNCNKTGHIARNCPEGGRESATQTC 413
D CY C GH AR+C Q +CY+C GHIAR+C + ++ C
Sbjct: 198 DGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCAT--KRQPSRGC 255
Query: 414 YNCNKSGHISRNCPD-------GTKTCYVXGKPGHISRDAT 515
Y C SGH++R+C CY GK GH +R+ +
Sbjct: 256 YQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 65.7 bits (153), Expect = 2e-11
Identities = 40/120 (33%), Positives = 52/120 (43%), Gaps = 32/120 (26%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPD----------EPSCYNCNKTGHIARNCPE---------GGR 392
CY C TGH AR+C + + CY C GH+AR+C + G
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 393 ESATQTCYNCNKSGHISRNCPD------------GTKTCYVXGKPGHISRD-ATRRGTSR 533
+ CY C GH +R+C G+ TCY G GHI+RD AT+R SR
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSR 253
Score = 62.9 bits (146), Expect = 2e-10
Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 31/115 (26%)
Frame = +3
Query: 270 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 407
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 408 ---TCYNCNKSGHISRNCPD--------------GTKTCYVXGKPGHISRDATRR 521
CY C GH++R+C G CY G GH +RD T++
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQK 216
Score = 58.0 bits (134), Expect = 5e-09
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Frame = +3
Query: 336 CYNCNKTGHIARNCPEGG-------RESATQTCYNCNKSGHISRNCPD------------ 458
CYNC + GHI+++C GG R + CYNC +GH +R+C
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 459 GTKTCYVXGKPGHISRDATRRGTSRSN 539
G CY G GH++RD T++ +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGD 188
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKKR 261
CY C TGHFAR+CT G + + C+ C GH ARDC ++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQK 182
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = +1
Query: 109 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDC 147
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +3
Query: 240 CEGLQEEADRCYRCNGTGHIARECAQ-----SPDEPSCYNCNKTGHIARNC 377
C ++ + CY+C G+GH+AR+C Q ++ +CY C K GH AR C
Sbjct: 245 CATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
CY+C +GH AR+C Q G SG C+KC + GHFAR+C
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFAREC 295
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKCNRTGHFARDCKKRL 264
CY C GH AR+CTQ V + D + C+ C GHFARDC +++
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKV 217
Score = 48.0 bits (109), Expect = 5e-06
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
CY C GHFAR+CTQ C+ C GH ARDC
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 245
Score = 35.1 bits (77), Expect = 0.040
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 103 SSSVCYKCNRTGHFARECT 159
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 67.3 bits (157), Expect = 8e-12
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHIS 443
RC+ C GH+A C+ +E C++C K+GH AR+C R + C NC K GH++
Sbjct: 94 RCWNCREPGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLA 150
Query: 444 RNCPDGTKTCYVXGKPGHISRD 509
+C + K C GHI+RD
Sbjct: 151 ADCTN-DKACKNCRTSGHIARD 171
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +3
Query: 258 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 437
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 438 ISRNCPDGTKTCYVXGKPGHISRDATRRGTSRSNL 542
++ NC C+ GK GH +RD + + +L
Sbjct: 104 VASNC-SNEGICHSCGKSGHRARDCSNSDSRAGDL 137
Score = 61.3 bits (142), Expect = 5e-10
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 449
C C GHIA EC E C+NC + GH+A NC G C++C KSGH +R+
Sbjct: 76 CNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------ICHSCGKSGHRARD 126
Query: 450 CPDG------TKTCYVXGKPGHISRDAT 515
C + + C K GH++ D T
Sbjct: 127 CSNSDSRAGDLRLCNNCFKQGHLAADCT 154
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 449
C C GH+A +C ++ +C NC +GHIAR+C C C+ SGH++R+
Sbjct: 140 CNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSISGHVARH 190
Query: 450 CPDG 461
CP G
Sbjct: 191 CPKG 194
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 28/90 (31%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------------EGGRE---- 395
C C +GHIAR+C ++P C C+ +GH+AR+CP +GG +
Sbjct: 159 CKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGL 215
Query: 396 ----------SATQTCYNCNKSGHISRNCP 455
SA C+NC GH + CP
Sbjct: 216 SRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +1
Query: 109 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKKRLTV 270
SVC C GH A ECT R+ G N E C C ++GH ARDC +
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 271 ATDV 282
A D+
Sbjct: 134 AGDL 137
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +1
Query: 109 SVCYKCNRTGHFARECT------QGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
++C C R GHFAR+C+ G+ + +C+ C GH A +C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNC 108
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 103 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADC 153
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 199 QREKCFKCNRTGHFARDC 252
Q C C R GHFARDC
Sbjct: 53 QGNLCNNCKRPGHFARDC 70
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +1
Query: 103 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKK 258
+ C C +GH AR+C R C C+ +GH AR C K
Sbjct: 155 NDKACKNCRTSGHIARDC-------------RNDPVCNICSISGHVARHCPK 193
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEGGRESATQ--TCYNCNKS 431
C +C GH + C + +E S CYNC TGH +CP + T+ +C+ C
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQ 160
Query: 432 GHISRNCPDGTKTCYVXG 485
GHIS+NCP+ Y G
Sbjct: 161 GHISKNCPENKHGIYPMG 178
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +3
Query: 258 EADRCYRCNGTGHIARECAQSPDE-----PSCYNCNKTGHIARNCPEG--GRESATQTCY 416
E CY C TGH C ++ SC+ C GHI++NCPE G C
Sbjct: 123 EKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCK 182
Query: 417 NCNKSGHISRNCPDGTKTCYVXGKPGHISR-DATRRG 524
C H+ ++CPD K +P SR DAT RG
Sbjct: 183 VCGSVAHLVKDCPD--KFNQESAQPKKTSRFDATPRG 217
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +3
Query: 282 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 461
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 462 T------KTCYVXGKPGH 497
K CY G GH
Sbjct: 118 NNESSEKKLCYNCGDTGH 135
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 106 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
+ +C +C R GH + C + + + +++ C+ C TGH C
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHC 140
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 112 VCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
+CY C TGH C D G + CF C GH +++C
Sbjct: 126 LCYNCGDTGHSLSHCPYP---MEDGG--TKFASCFICKGQGHISKNC 167
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKKR 261
C+ C+ H A+ C + R+ + C +C R GH ++C ++
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERN-------KICLQCRRRGHSLKNCPEK 117
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 58.4 bits (135), Expect = 4e-09
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 106 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
+S CY+C GHFAREC +S G + C++CN +GHFAR+C
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFAREC 371
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 386
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 387 ----GRESATQTCYNCNKSGHISRNCPDGTK 467
GRES T CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +3
Query: 258 EADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 398
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 270 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 446
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 447 NCPDGTK 467
+CPD K
Sbjct: 222 DCPDKYK 228
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE-SATQTCYNCNKSGH 437
C+ C H A++C++ D CY C KTGH A++CP+ + S C C GH
Sbjct: 191 CFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 333 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVXGKPGHISRD 509
SCY+C + GH + NCP + + C+ C H ++ C G CY+ K GH ++D
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKD 222
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGHFARDCKKRLTV 270
CY+C + GH C + S ++ FN R+ +C++C GHFAR+C ++
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 271 AT 276
+T
Sbjct: 347 ST 348
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 103 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 228
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Frame = +3
Query: 267 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGRESAT---- 404
+CY C GH+ C P SCY C + GH C +SAT
Sbjct: 262 QCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERL 318
Query: 405 ------QTCYNCNKSGHISRNCPDGTKTCYVXGK 488
CY C + GH +R CP+ + G+
Sbjct: 319 FNSREASECYRCGEEGHFARECPNSSSISTSHGR 352
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 252 QEEADRCYRCNGTGHIARECAQS 320
+E CYRCNG+GH AREC S
Sbjct: 352 RESQTLCYRCNGSGHFARECPNS 374
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 408 TCYNCNKSGHISRNCPDGT---KTCYVXGKPGHISRDATR 518
+CY+C + GH S NCP T K C++ G H ++ ++
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSK 206
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +1
Query: 73 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
A+ F P A S CY C GH + C ++R+ CF C H A+ C
Sbjct: 155 ARYFDPPDAGWVS-CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQC 204
Query: 253 KK 258
K
Sbjct: 205 SK 206
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 255
CY C +TGH A++C +G + C +C GH CK
Sbjct: 210 CYICKKTGHRAKDCPD----KYKNG--SKGAVCLRCGDFGHDMILCK 250
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 56.0 bits (129), Expect = 2e-08
Identities = 41/118 (34%), Positives = 50/118 (42%), Gaps = 36/118 (30%)
Frame = +3
Query: 270 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 392
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 393 -ESATQTCYNCNKSGHISRNC----------------PDGTKTCYVXGKPGHISRDAT 515
S++ CY C K GH SR+C T CY GK GH SRD T
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCT 356
Score = 52.0 bits (119), Expect = 3e-07
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 25/101 (24%)
Frame = +3
Query: 261 ADRCYRCNGTGHIAREC-AQSPD---EPS----------CYNCNKTGHIARNCP------ 380
A C++C GH +R+C AQS + EP CY C K GH +R+C
Sbjct: 267 AGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQ 326
Query: 381 --EGGRESATQT---CYNCNKSGHISRNCPDGTKTCYVXGK 488
+ G+ +T + CY C K+GH SR+C +T GK
Sbjct: 327 QFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +1
Query: 97 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDC 252
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDC 283
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +1
Query: 103 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNRTGHFARDC 252
SS CYKC + GH++R+CT Q SG + C+KC + GH++RDC
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDC 355
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Frame = +1
Query: 70 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRT 231
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Query: 232 GHFARDC 252
GH++RDC
Sbjct: 313 GHWSRDC 319
Score = 44.4 bits (100), Expect = 7e-05
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Frame = +3
Query: 243 EGLQEEADRCYRCNGTGHIARECAQSP-DEPSCYNCNKTGHIARNCPEGGRESATQT-CY 416
E + + RC G+ + C + P+ Y+ K + + G + + T T CY
Sbjct: 181 ENVGRQFYRCPVFEGSCGFFKWCNDNVVSSPTSYSVTKNSNFGDSDTRGYQNAKTGTPCY 240
Query: 417 NCNKSGHISRNCPDGTKT-----------CYVXGKPGHISRDAT 515
C K GH +R+C + T C+ GKPGH SRD T
Sbjct: 241 KCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCT 284
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 70 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 207
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Frame = +3
Query: 255 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 416
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 417 NCNKSGHISRNC-----PDGTKTCYVXGKPGH 497
C + GH C + +C++ G+ GH
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGH 112
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +3
Query: 267 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 431
+CY CN GH+ C P SCY C + GH C +S + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 432 GHISRNCPDGTKTCY 476
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 47.6 bits (108), Expect = 7e-06
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 23/111 (20%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC--------PEGGRESATQTCY 416
CYRC GH C + D+ PSC+ C + GH C PE E Q
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPD 138
Query: 417 NCN----------KSGHISRNCPDGTKTCY--VXGKPGHISRDATRRGTSR 533
+ + + GH CPD + C+ + + G IS +++ + TS+
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSK 189
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +3
Query: 291 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNC 452
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 453 PDGTK 467
P+ ++
Sbjct: 211 PNSSQ 215
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKKRLTV 270
CY+C + GH C G DS CF C R GHF C +V
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSV 123
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQS 320
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 55 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 174
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 103 SSSVCYK-CNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
SSSVC++ +R F + S+ R C++C GH ARDC
Sbjct: 163 SSSVCFQEISREEGFISLNSSSKSTSKG---RETRRLCYECKGKGHIARDC 210
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Frame = +3
Query: 267 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC-----PEGGRESATQTCYNCNKS 431
RC+ C GH AR+C + CY C + GHI RNC P+ R+ + +
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPVKSR 159
Query: 432 GHISRNCPDGTKTCYVXGKPGHISRDATRRGTS 530
R P +++ Y G+ SR RR S
Sbjct: 160 SPRRRRSPSRSRS-YSRGRSYSRSRSPVRREKS 191
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 321 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 452
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 106 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 255
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQSP 323
++CYRC GHI R C SP
Sbjct: 121 NKCYRCGERGHIERNCKNSP 140
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Frame = +3
Query: 267 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC-----PEGGRESATQTCYNCNKS 431
RC+ C GH AR+C + CY C + GHI RNC P+ R+ + +
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPVKSR 118
Query: 432 GHISRNCPDGTKTCYVXGKPGHISRDATRRGTS 530
R P +++ Y G+ SR RR S
Sbjct: 119 SPRRRRSPSRSRS-YSRGRSYSRSRSPVRREKS 150
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 321 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 452
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 106 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 255
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
Score = 32.7 bits (71), Expect = 0.21
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQSP 323
++CYRC GHI R C SP
Sbjct: 80 NKCYRCGERGHIERNCKNSP 99
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 261 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 419
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +3
Query: 321 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVXGKPGHI 500
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 108
Query: 501 SRDATRRGTSR 533
SR R + R
Sbjct: 109 SRSPVRSRSPR 119
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 255
C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Frame = +3
Query: 354 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVXGKPGHISR 506
T +R P G R+ ++ C+NC GH +R+C D CY G+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 507 D 509
+
Sbjct: 94 N 94
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 208 KCFKCNRTGHFARDC 252
+CF C GH+ARDC
Sbjct: 59 RCFNCGVDGHWARDC 73
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 261 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 419
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +3
Query: 321 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVXGKPGHI 500
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 119
Query: 501 SRDATRRGTSR 533
SR R + R
Sbjct: 120 SRSPVRSRSPR 130
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 255
C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 107
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Frame = +3
Query: 354 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVXGKPGHISR 506
T +R P G R+ ++ C+NC GH +R+C D CY G+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 507 D 509
+
Sbjct: 105 N 105
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 208 KCFKCNRTGHFARDC 252
+CF C GH+ARDC
Sbjct: 70 RCFNCGVDGHWARDC 84
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 261 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 419
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +3
Query: 321 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVXGKPGHI 500
P C+NC GH AR+C G ++ CY C + GHI RNC + K + G
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPKK---LRRSGSY 149
Query: 501 SRDATRRGTSR 533
SR R + R
Sbjct: 150 SRSPVRSRSPR 160
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 255
C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Frame = +3
Query: 354 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVXGKPGHISR 506
T +R P G R+ ++ C+NC GH +R+C D CY G+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 507 D 509
+
Sbjct: 135 N 135
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 208 KCFKCNRTGHFARDC 252
+CF C GH+ARDC
Sbjct: 100 RCFNCGVDGHWARDC 114
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 449
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQG---GGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 450 CPDG 461
C G
Sbjct: 195 CTSG 198
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGV-VSRDSGFNRQRE-----------KCFKCNRTGHFARDC 252
C+KC GH AREC+QGG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 333 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVXGKPGHISRDA 512
SC+ C + GH+AR C +GG + SG G +CY G+ GH +RD
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Query: 513 TRRG 524
T G
Sbjct: 196 TSGG 199
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGG 168
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 163 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKK 258
GG S G CFKC GH AR+C +
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQ 153
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 357 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 461
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 459 GTKTCYVXGKPGHISRDATRRG 524
G +C+ G+PGH++R+ ++ G
Sbjct: 134 GDNSCFKCGEPGHMARECSQGG 155
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 458
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +3
Query: 270 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 431
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 432 GH 437
H
Sbjct: 96 DH 97
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKKRLT 267
CYKC + GHFAR C VV++ + C+ C+ GH + C + T
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNKRT 80
Score = 35.5 bits (78), Expect = 0.030
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +3
Query: 405 QTCYNCNKSGHISRNCPDGTK------TCYVXGKPGHISRDATRRGTSRSN 539
+ CY C K GH +R+C T+ TCY + GH S + T + N
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVN 84
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Frame = +3
Query: 258 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSG 434
E+ + + N R + + C NC + GH CPE G + + C C G
Sbjct: 240 ESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKG 299
Query: 435 HISRNCP-------DGTKT----CYVXGKPGHISR 506
H R CP G T C + G+ GH SR
Sbjct: 300 HNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSR 334
Score = 35.5 bits (78), Expect = 0.030
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = +3
Query: 243 EGLQEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 422
+G+ +C C GH +R C + P+ N + +G N E G T C C
Sbjct: 314 KGISTRYHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFC 366
Query: 423 NKSGHISRNCP 455
K GH R CP
Sbjct: 367 KKMGHNVRTCP 377
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQG-GVVSRDSGFNRQREKCFKCNRTGHFARDCKK 258
C C GH R C + +V++ G + + KC C GH +R C+K
Sbjct: 292 CRGCGGKGHNRRTCPKSKSIVTK--GISTRYHKCGICGERGHNSRTCRK 338
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKKRLTVAT 276
C C + GH C + G + D F +C C GH R C K ++ T
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVT 313
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Frame = +3
Query: 219 VQPHRTLCEGLQEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 389
+ P +L E +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 390 RESATQTCYNCNKSGHISRNCPDGTKTCYVXGKPGHISRDA 512
RE A+ C C + H + CP+ Y G G ++A
Sbjct: 638 REEASSLCIRCFQLSHWAATCPNA--PLYGSGAEGRAMKNA 676
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +1
Query: 112 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 252
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Frame = +3
Query: 336 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVXGK 488
CY C + GH+AR+C EGG Y G+ R G +CY G+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 489 PGHISRDATRRG 524
GH +RD T G
Sbjct: 191 SGHFARDCTSGG 202
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 428
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 429 SGHISRNCPDG 461
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGG 168
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.013
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 333 SCYNCNKTGHIARNCPEGGR 392
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 22/70 (31%)
Frame = +1
Query: 109 SVCYKCNRTGHFARECTQG----------------------GVVSRDSGFNRQREKCFKC 222
S CYKC GH AR+C++G G G C+ C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 223 NRTGHFARDC 252
+GHFARDC
Sbjct: 189 GESGHFARDC 198
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 163 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKK 258
GG R G R C+KC GH ARDC +
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSE 146
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 384 GGRESATQTCYNCNKSGHISRNCPDG 461
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 459 GTKTCYVXGKPGHISRDATRRG 524
G CY G+PGH++RD + G
Sbjct: 127 GGSDCYKCGEPGHMARDCSEGG 148
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 100 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 204
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 160 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKK 258
+GG R G + KC++C GHFAR+C++
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECRR 106
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPEG 386
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 258 EADRCYRCNGTGHIAREC 311
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 384 GGRESATQT--CYNCNKSGHISRNCPDG 461
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 100 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 204
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 160 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKK 258
+GG R G + KC++C GHFAR+C++
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECRR 106
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPEG 386
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 258 EADRCYRCNGTGHIAREC 311
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 384 GGRESATQT--CYNCNKSGHISRNCPDG 461
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 204
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 35.9 bits (79), Expect = 0.023
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 208 KCFKCNRTGHFARDCKKR 261
KC++C TGHFAR+C+ R
Sbjct: 100 KCYECGETGHFARECRNR 117
Score = 31.5 bits (68), Expect = 0.50
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 384 GGRESATQTCYNCNKSGHISRNC 452
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 267 RCYRCNGTGHIAREC 311
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 336 CYNCNKTGHIARNCPEGG 389
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 163 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
GG SR G ++CFKC R GH+ARDC
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDC 130
Score = 31.5 bits (68), Expect = 0.50
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGG 168
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 327 EPSCYNCNKTGHIARNCPEGG 389
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQSPDE 329
D C++C GH AR+C + D+
Sbjct: 115 DECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 163 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
GG SR G ++CFKC R GH+ARDC
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDC 130
Score = 31.5 bits (68), Expect = 0.50
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGG 168
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 327 EPSCYNCNKTGHIARNCPEGG 389
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQSPDE 329
D C++C GH AR+C + D+
Sbjct: 115 DECFKCRRPGHWARDCPSTGDD 136
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 199 QREKCFKCNRTGHFARDC 252
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 297 IARECAQSP-DEPSCYNCNKTGHIARNCP 380
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 115 CYKCNRTGHFAREC 156
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 115 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 204
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 34.7 bits (76), Expect = 0.053
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 163 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCKKR 261
GG D G R KC++C +GHFAR+C+ R
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECRSR 114
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 387 GRESATQTCYNCNKSGHISRNC 452
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 267 RCYRCNGTGHIAREC 311
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 336 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 455
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.053
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 205 EKCFKCNRTGHFARDC 252
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.21
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGG 168
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 327 EPSCYNCNKTGHIARNCPEGG 389
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 384 GGRESATQTCYNCNKSGHISRNCP 455
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 264 DRCYRCNGTGHIAREC 311
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 408 TCYNCNKSGHISRNCPDGT---KTCYVXGKPGHISRDATRRGTSRSNL 542
TCY+C + HI+ +CP T K+C++ H +R T+ +NL
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQCTKVWDIDANL 191
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +3
Query: 333 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVXGKPGHISRDA 512
+CY+C + HI +CP + ++C+ C H +R C TK + G I +D
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC---TKVWDIDANLG-IHQDK 197
Query: 513 TRR 521
T+R
Sbjct: 198 TQR 200
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 34.3 bits (75), Expect = 0.070
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Frame = +3
Query: 210 VLQVQPHRT-LCEGLQEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC--- 377
++ V PH + G+ + R + R+ A +P + C C T H+ +C
Sbjct: 245 IIGVNPHSLGIGYGINSKVKPRIRATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYS 303
Query: 378 -PEGGRESATQTCYNCNKSGHISRNCP 455
P CY C GH+S CP
Sbjct: 304 SPTMPYMDNYTKCYCCRGLGHVSMYCP 330
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.070
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Frame = +1
Query: 178 RDSGFNRQREK---------CFKCNRTGHFARDC 252
RD G++R R + CFKC + GHFAR+C
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFAREC 133
Score = 34.3 bits (75), Expect = 0.070
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVSRDSG 189
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 336 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 467
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.9 bits (74), Expect = 0.093
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 393 ESATQTCYNCNKSGHISRNCPD-----GTKTCYVXGKPGHISRDATRRGTSRS 536
ESA C+ C + GH SR+CP G + P I + +R +S+S
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKS 54
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 211 CFKCNRTGHFARDCKKRLTVA 273
CFKC R GH++RDC VA
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQGGVVS 177
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +3
Query: 336 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 449
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 336 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 461
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +3
Query: 270 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 404
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 342 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 467
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 402 TQTCYNCNKSGHISRNCPD-GTKTCYVXGKPGHISRDAT 515
T+ C +CN +GH SR CP+ G K V G I + A+
Sbjct: 2 TRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSAS 40
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 336 CYNCNKTGHIARNCPEGG 389
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 267 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 389
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 390 RESATQTCYNCNKSGHISRNCPD 458
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 333 SCYNCNKTGHIARNCPE 383
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 32.3 bits (70), Expect = 0.28
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Frame = +3
Query: 240 CEGLQEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 407
C+GL +D C C G G + P SC C TGHI + +
Sbjct: 189 CDGLGHPSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHIIK-----------E 233
Query: 408 TCYNCNKSGHISRNCPDGTKTCYVXGKPGHISRDATRRGTSRSNLVSLT 554
C +C SG + +GTKT + PG + +AT N+ S T
Sbjct: 234 YCMSCRGSGIV-----EGTKTAELV-IPGGVESEATITIVGAGNVSSRT 276
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 32.3 bits (70), Expect = 0.28
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Frame = +3
Query: 240 CEGLQEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 407
C+GL +D C C G G + P SC C TGHI + +
Sbjct: 189 CDGLGHPSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHIIK-----------E 233
Query: 408 TCYNCNKSGHISRNCPDGTKTCYVXGKPGHISRDATRRGTSRSNLVSLT 554
C +C SG + +GTKT + PG + +AT N+ S T
Sbjct: 234 YCMSCRGSGIV-----EGTKTAELV-IPGGVESEATITIVGAGNVSSRT 276
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.37
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 199 QREKCFKCNRTGHFARDCK 255
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 297 IARECAQSPDEPS-CYNCNKTGHIARNC 377
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.50
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 378 PEGGRESATQTCYNCNKSGHISRNC 452
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.87
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 112 VCYKCNRTGHFAREC 156
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 211 CFKCNRTGHFARDCKKRLTVATD 279
C++C + GH ARDC + T D
Sbjct: 926 CYRCKKVGHLARDCHGKETSDMD 948
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 336 CYNCNKTGHIARNC 377
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 270 CYRCNGTGHIAREC 311
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 441 SRNCPDGTKTCYVXGKPGHISRDATRRGTS 530
S D K CY K GH++RD + TS
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDCHGKETS 945
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 243 EGLQEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 389
E + ++ RC+ C G H REC + D + + K RN G
Sbjct: 234 EIIDDDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 431
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 327 EPSCYNCNKTGHIARNCPEGGRESATQ 407
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 408 TCYNCNKSGHISRNCPDGTKTCYV 479
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 30.7 bits (66), Expect = 0.87
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 252 QEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 407
Q+E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 408 TCYNCNKSGHISRNCP 455
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 30.7 bits (66), Expect = 0.87
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 252 QEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 407
Q+E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 408 TCYNCNKSGHISRNCP 455
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Frame = +3
Query: 180 GFRFQSAT*EVLQVQPHRTLCEGLQEEADR-CYRCNGTGHIARECAQSP-------DEPS 335
G+ S +Q +++ + L A R C C+ T H EC P D
Sbjct: 267 GYGINSKVKPGIQATARKSVGKKLATPAKRPCEICSHTDHPTEECLYPPQTIPYTDDYAK 326
Query: 336 CYNCNKTGHIARNC 377
CY C GH++ C
Sbjct: 327 CYYCEGMGHMSMYC 340
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 276 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 389
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 112 VCYKCNRTGHFARECTQGG 168
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 85 SKPIAMSSSVCYKCNRTGHFAREC 156
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 252 QEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 431
Q+E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 432 GHISRNCP 455
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 252 QEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 431
Q+E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 432 GHISRNCP 455
G + CP
Sbjct: 205 GKVM--CP 210
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 437
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 438 ISRNC 452
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 112 VCYKCNRTGHFARECTQGG 168
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 297 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 449
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 VSRDSGFNR-QREKCFKCNRTGHFARDCKKR 261
VSRD ++ ++ C+ C GH+ DC R
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSR 177
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 402 TQTCYNCNKSGHISRNCPD-GTKTCYVXGKPG 494
T+ C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 255 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 392
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 467
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 255 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 392
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 467
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g22690.1 68414.m02835 gibberellin-responsive protein, putative
similar to SP|P46688 Gibberellin-regulated protein 2
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 119
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 522 RASSHRAR--CGRACRTRSTSWCRRDSCGRCGRTCCS 418
R HR R CG AC R + R+ C R +CC+
Sbjct: 51 RTYHHRPRINCGHACARRCSKTSRKKVCHRACGSCCA 87
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -1
Query: 492 RACRTRSTSWCRRDSCGRCGRTCCSYSRSASQTLAPPRDSSVRCGPSC 349
R C T + C C RC CS S S T+ PP S+ C P C
Sbjct: 318 RTC-TVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 323 GRAVVLQLQQDGPHRTELSRGGARVCDADLL*LQQVRPHLPQLSRRHQ 466
G +VV LQ DGPH ++R AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At1g34095.1 68414.m04227 expressed protein ; expression supported
by MPSS
Length = 203
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 417 NCNKSGHISRNCPDGTKTCYVXGKPGHISRDATRRGTSRSNL 542
+C K H + P G + C+V KP H+ ++ R R+NL
Sbjct: 122 DCWKKQHRDVSLPTGVR-CFVRNKPWHVVKNYKVRKAERANL 162
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 357 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 455
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 455
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Frame = +3
Query: 411 CYNCNKSGHISRNCPDGTKT------CYVXGKPGHISRDATRRGTS 530
C C + GH CP T T C + G GH + D +GT+
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCPVKGTT 408
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 455
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Frame = +3
Query: 411 CYNCNKSGHISRNCPDGTKT------CYVXGKPGHISRDATRRGTS 530
C C + GH CP T T C + G GH + D +GT+
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCPVKGTT 408
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 163 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Frame = +3
Query: 213 LQVQPHRTLCEGLQEEADR-CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIA 368
+Q +++ + L A R C C+ T H +EC P D C C GH++
Sbjct: 262 IQATARKSVGKKLATPAKRPCEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMS 321
Query: 369 RNCP 380
CP
Sbjct: 322 MYCP 325
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 163 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 252
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +3
Query: 255 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 425
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 426 KSGHISRNCP 455
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 252 QEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 431
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 432 GHIS 443
G ++
Sbjct: 128 GSLT 131
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 411 CYNCNKSGHISRNCPDGTKT 470
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 336 CYNCNKTGHIARNCP 380
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 100 MSSSVCYKCNRTGHFAREC 156
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 211 CFKCNRTGHFARDCKKRLT 267
CF C++ GH+A++C + T
Sbjct: 6 CFHCHQPGHWAKNCPLKTT 24
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 190 FNRQREKCFKCNRTGHFARDCKKRL 264
F + KCF C + GH A DC+ ++
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKI 283
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 103 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKKRL 264
+S Y N T E GG + G + +R C++C GH + C +L
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKL 498
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 405 QTCYNCNKSGHISRNCPD 458
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 405 QTCYNCNKSGHISRNCP 455
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 405 QTCYNCNKSGHISRNCP 455
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 447 CGRCGRTCCSYSRSASQTLAPPRDSSVRC 361
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 270 CYRCNGTGHIARECAQSP 323
C++C T HIA++C P
Sbjct: 342 CFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 211 CFKCNRTGHFARDC 252
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 115 CYKCNRTGHFARECTQG 165
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 342 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 449
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 342 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 449
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 342 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 449
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 73 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 183
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 255 EEADRCYRCNGTGHIARECAQS 320
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 324 DEPSCYNCNKTGHIARNCPE 383
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 411 CYNCNKSGHISRNCP 455
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At2g33090.1 68415.m04057 expressed protein ; expression supported
by MPSS
Length = 248
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 414 YNCNKSGHISRNCPDGTKTCYVXGKPGH-ISRDATRRGTSRSNLVSLTIN 560
Y C K+ H++ N P+ K C K H ISRD ++ + L N
Sbjct: 24 YTCKKALHLTLNKPNVVKACSDLKKNEHQISRDFAAETKKKTEFLVLKKN 73
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -1
Query: 459 RRDSCGRCGRTC--CSY--SRSASQTLAPPRDSSVRCGPSCCSCNTTARPGS 316
R+D G G + CS S + S ++ P S G SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAG-SCCCCSSTADSGS 111
>At5g61620.1 68418.m07732 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 317
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 396 SATQTCYNCNKSGHISRNCPDGTKTCYVXGKPGHISRDATR 518
+ +TC +C +GH +R C +G V +IS D R
Sbjct: 7 TVAKTCSHCGHNGHNARTCLNGVNKASVKLFGVNISSDPIR 47
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = +3
Query: 237 LCEGLQEEADRCYRCNGTGHIAREC---AQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 407
+ G + D C+RC GH +C + + D P C G RE+ +
Sbjct: 1 MLNGTMQTGD-CFRCRQAGHWINDCPLKSYTDDPPPAIQCPCGGGFCEIKVANTRENPGR 59
Query: 408 TCYNC 422
Y C
Sbjct: 60 KFYKC 64
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 323 GRAVVLQLQQDGPHRTELSRGGARVCDADLL*LQQVRPHLPQLSRRHQ 466
G +VV Q DGPH ++R AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 323 GRAVVLQLQQDGPHRTELSRGGARVCDADLL*LQQVRPHLPQLSRRHQ 466
G +VV Q DGPH ++R AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 264 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 434
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 435 HISRNC 452
IS C
Sbjct: 275 EISTPC 280
>At2g10050.1 68415.m01043 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 120
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 462 TKTCYVXGKPGHISRDATRRGTSRSNLVSLT 554
T TCY GK GH S + + S N +LT
Sbjct: 52 TGTCYKFGKEGHKSFECRSKKDSNKNEANLT 82
>At1g03190.2 68414.m00297 DNA repair protein / transcription factor
protein (UVH6) identical to DNA repair/transcription
factor protein (UVH6) gi:22651569 gb:AY090788
Length = 758
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = -1
Query: 519 ASSHRARCGRACRTRSTSWCRRDSCGRCGRTCC----SYSRSASQTLAPP 382
A+ +R ACR R+ SW R S C +Y ++A L PP
Sbjct: 123 AAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPP 172
>At1g03190.1 68414.m00296 DNA repair protein / transcription factor
protein (UVH6) identical to DNA repair/transcription
factor protein (UVH6) gi:22651569 gb:AY090788
Length = 758
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = -1
Query: 519 ASSHRARCGRACRTRSTSWCRRDSCGRCGRTCC----SYSRSASQTLAPP 382
A+ +R ACR R+ SW R S C +Y ++A L PP
Sbjct: 123 AAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPP 172
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +3
Query: 279 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 380
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4)
contains Pfam domain PF00098: Zinc knuckle; identical to
cDNA CAX-interacting protein 4 GI:27651998
Length = 332
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 172 VSRDSGFNRQ--REKCFKCNRTGHFARDCKKRLTVATD 279
++R +G N R C KC R GH C+ L+ D
Sbjct: 68 LARITGSNNDEARGSCKKCGRVGHLTFQCRNFLSTKED 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,385
Number of Sequences: 28952
Number of extensions: 276924
Number of successful extensions: 1543
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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