Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0521.Seq
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   2.9  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   2.9  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   3.8  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   5.0  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   5.0  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   6.7  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   6.7  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.8  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   8.8  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   8.8  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   8.8  

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 607 TTSPCREWVIAR-LLPSLDVVAVSQAPSPESNPDSPLPVTT 726
           TT+P +  V++     ++ V++V+ +P+P +  + P PV+T
Sbjct: 158 TTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVST 198


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 115 LTSNVAIRMHPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKL 288
           +T    +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L
Sbjct: 207 MTRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +3

Query: 594 VIFRHYLPVPGVGNCAP---AAFLGCG 665
           + FR++  +P VG+C+    AAF GCG
Sbjct: 243 IAFRYFPWLPHVGDCSGSLFAAFFGCG 269


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 91  FVLRRSKNLTSNVAIRMHPVIPINHYLGVLK-TNKIEPRSYSIIPCTKY 234
           F ++ S + +++++I  HP +PINH     K  N+    +   +P TK+
Sbjct: 149 FEVKNSLHDSTDLSITHHPHLPINHQGNTWKHANESLQSNQGPVPNTKF 197


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 574 PRKSPVSLFFVTTSPCREWVIARLLPSLDVVAVSQAPSPESNPDSPLPVTT 726
           P  S ++ F  T    ++WV+   +PS + +   Q   P S  ++ L + T
Sbjct: 104 PSDSKIATFIKTKYEFKKWVLYPEIPSPETLKPEQNTRPVSEVNASLDLNT 154


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 113 FLDLRKTNFSESICQRCFHQSRTKVRGSKAIRYRPSS 3
           F +LRK N S+ +  R  +QS    R +     RP S
Sbjct: 650 FEELRKLNSSKRVSDRVLYQSSATPRSTDVSPTRPDS 686


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 653 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 751
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 187 NKIEPRSYSIIPCTKYSSSIFSPFEH 264
           N ++P+S +++P T +  SI SP ++
Sbjct: 29  NPVKPQSSNVVPGTSHIGSIKSPADY 54


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 655 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 756
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 739 LRLPWLSRVTGNQGSIPEREPEKRLP 662
           LRL +L +   NQ S  E++ EKR+P
Sbjct: 283 LRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 94  VLRRSKNLTSNVAIRMHPVIPINHYLGVLKTNKIEPRSYSIIPCTK--YSSSIFSPFEHS 267
           VL+ +K   +   + +HP +P   YL   K  +I   +YS +      Y+S I    EH 
Sbjct: 176 VLKIAKVKPTIHQMELHPYLPQTEYLEKHKKLQIHVSAYSPLANQNDAYNSDISKLIEHK 235

Query: 268 NLFKV 282
            L  +
Sbjct: 236 TLVDI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,489
Number of Sequences: 5004
Number of extensions: 59048
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)