Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0521.Seq
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           33   0.19 
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    29   4.0  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    29   4.0  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    29   5.3  
03_06_0180 + 32175658-32178145,32178765-32178808                       28   9.2  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   9.2  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    28   9.2  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 562 PITRPRKSPVSLFFVTTSPCREWVIARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 735
           P ++ R +P SL    +  C+E    RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 736 AE 741
            E
Sbjct: 146 IE 147


>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 287  CRPTSXLTEEHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNN 466
            C       +   D+ L+L R+  +      MLR    +TA+A  +++  K   E  ++NN
Sbjct: 1045 CAAAKSAAQSEHDKNLLLQRQLDDSLREITMLRSSKIMTAEAERENSNLKNLVESLSKNN 1104

Query: 467  FSIRY 481
             S+ Y
Sbjct: 1105 SSLEY 1109


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +1

Query: 133 IRMHPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFEHSNLFKVKLSAHLXXH 309
           I+M P  P  H+L     N     +    P   YSS+I  PF H+N F   +   L  H
Sbjct: 53  IKMVPPGP--HFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 157 INHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPFE 261
           I H L +LK  KI P   +I  C +YS    S F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 23/52 (44%), Positives = 26/52 (50%)
 Frame = +2

Query: 509 TRLALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG*LRACCLPWMW 664
           T  ALQ  LV ++ V + R R  V V    FSSLP  A      AC LPW W
Sbjct: 73  TDTALQTRLVGMY-VLARRFRDAVAV----FSSLPRGAA-----ACALPWNW 114


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 458 RNNFSIRYWSWNYRGC 505
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 113 FLDLRKTNFSESICQRCFHQSRTKVRGSKAIRY 15
           ++++   N   SIC RC H S  K +  K   Y
Sbjct: 561 YVEVENGNDKSSICGRCHHLSSAKAKYQKRFSY 593


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,649,112
Number of Sequences: 37544
Number of extensions: 409809
Number of successful extensions: 1197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)