Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0521.Seq
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    29   3.6  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    28   6.2  
Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 631 VIARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 750
           V+   +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 554 VLKTTVPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 110 LDLRKTN--FSESICQRCFHQSRTKVRGS 30
           LDL  T+   S  ICQ CFHQ   K++G+
Sbjct: 329 LDLEPTHEELSYMICQLCFHQVGKKLQGN 357


>Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical
           protein T12G3.1 protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 562 PITRPRKSPVSLFFVTTSPCREWVIARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 741
           P T    S  S     T+P     +    P ++ + V   P  ESNP+    VT MV A 
Sbjct: 525 PATTELASTTSATPAVTAPASIVPVTPTAPIVETLIVPPLPPVESNPEE---VTPMVTAP 581

Query: 742 TTIES 756
            +I S
Sbjct: 582 ISIHS 586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,630,012
Number of Sequences: 27780
Number of extensions: 346500
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)