Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0521.Seq
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    34   0.089
At1g65320.1 68414.m07407 CBS domain-containing protein contains ...    31   1.1  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    30   1.9  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   4.4  
At1g10780.1 68414.m01235 F-box family protein  ; similar to SKP1...    28   5.8  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   7.7  

>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 562 PITRPRKSPVSLFFVTTSPCREWVIARLLPSLDVVAVSQAPSPESNPDSPLPVT 723
           PI+ P KSP +    TTSP +   +     +      + A SP  +P SP PV+
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At1g65320.1 68414.m07407 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 425

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 559 IPITRPRKSPVSLFFVTTSPCREWVIARLLPSLDVVA-VSQAPSPESNPDSPLPVTTMVV 735
           IP+ R R +P    FV  S  R+     +L SLD+VA +++    +      +PV+ +V 
Sbjct: 44  IPVWRKRTTPSLPGFVENSEMRQQRFVGILNSLDIVAFLAKTECLQEEKAMKIPVSEVVS 103

Query: 736 AETTI 750
            + T+
Sbjct: 104 PDNTL 108


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 634 IARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 741
           I RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 82  ILRLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 649 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 756
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At1g10780.1 68414.m01235 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 418

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 287 NFTLNKLECSKGLKMLLEYFVHGIIE-YDLGSILLVFRTPR**LIGITGCIRIATLEVKF 111
           N  L   E  K + + L Y  H  ++ Y  G+ LLV  + R   + + GC  I   E KF
Sbjct: 178 NLLLLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKF 237

Query: 110 L 108
           L
Sbjct: 238 L 238


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 513 DLPSNCSSLKYLKCTHSDYE 572
           DL +NCSSL+YL  +H+  E
Sbjct: 167 DLFNNCSSLRYLSLSHNHLE 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,582,556
Number of Sequences: 28952
Number of extensions: 318187
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)