Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0520.Seq
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    28   1.2  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    28   1.6  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   6.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.6  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +1

Query: 598 HVEQLPVDAADSEDVRD---ELHDVTGQRGPHTGQENVALLLTRPSYSR 735
           HV  L +  A+S D+     EL       GP T   N A  L+ P Y++
Sbjct: 277 HVHSLNLSTAESHDLESTDSELWSEISDAGPDTNTINTAAKLSEPVYAK 325


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 503 AEETPEGLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGV- 679
           ++  P  +M G +   L+K+     +       WN Y +   +QK    N++      + 
Sbjct: 265 SKRAPAAVMLGNYYRKLIKIFLVCDNYLLHAAAWNRYFTFTNVQKPATANFVILSALSIP 324

Query: 680 LIPGRKMS 703
           +I   K+S
Sbjct: 325 IIDANKLS 332


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 569 DLSDLYTAQVTWNSYQSMLRIQKMYVMNY 655
           D ++ YT ++ W S ++++++ K+Y   Y
Sbjct: 481 DNTERYTFEICWKSAKTIVQLLKIYFKKY 509


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 261  DVCALIEDYLDNNEDYIASMVQEHYEDPYWYQIKLYYI 374
            +V  L++   DN   YI S   E  + P W+++ L  I
Sbjct: 1828 EVRHLVKSSFDNIFSYIFSEEPESKKSPIWFELPLQVI 1865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,282
Number of Sequences: 5004
Number of extensions: 58964
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)