Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0520.Seq
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428...    31   1.3  
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952...    29   5.1  
10_08_0897 - 21419639-21420633,21420826-21421153                       29   5.1  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    29   5.1  
05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411     28   6.8  
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259...    28   6.8  
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688...    28   6.8  

>07_01_0577 -
           4286048-4286186,4286600-4286660,4286957-4287089,
           4287286-4287350,4288346-4288451,4288529-4288750,
           4289619-4289852,4289948-4290037,4290605-4291507
          Length = 650

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 64  DVYVAKATYTNEINNTGWAFLELHTSRDS 150
           D    K+   N + N G+AFLEL TSRD+
Sbjct: 345 DSVTLKSDSNNPVCNRGFAFLELETSRDA 373


>11_03_0065 -
           9522478-9525335,9525513-9526028,9526432-9527247,
           9527440-9527767
          Length = 1505

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 282 DYLDNNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYNDATKSMYEWLTVRD 446
           D +DN    I+ ++++   +    +IK Y  +L  +A  YN++ KS  EW  +RD
Sbjct: 231 DIIDNRRHSISELMEKLDHES---EIKYYEDKLRDIADEYNNSMKS--EWPKIRD 280


>10_08_0897 - 21419639-21420633,21420826-21421153
          Length = 440

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 282 DYLDNNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYNDATKSMYEWLTVRD 446
           D +DN    I+ ++++   +    +IK Y  +L  +A  YN++ KS  EW  +RD
Sbjct: 231 DIIDNRRHSISELMEKLDHES---EIKYYEDKLRDIADEYNNSMKS--EWPKIRD 280


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 426 RTCS*WHHCSRLLGLPAGCSIALSGTNKDPRSVLAP*MLCNLHYYL 289
           RTCS  HH ++L+   AG  I L   N+         M CN+H  L
Sbjct: 622 RTCSDCHHAAKLISTIAGREIILKDVNR------IHYMKCNIHMQL 661


>05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411
          Length = 220

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 111 CIIYFVGVSCFRYVYIGYISVIVSHGYS 28
           CII+  G+SCF +V+ G+++V   H +S
Sbjct: 193 CIIHLFGLSCF-FVFDGFLTVKKYHIFS 219


>03_05_0582 +
           25823862-25824459,25824915-25825063,25825691-25825960,
           25826031-25826161,25826545-25826662,25826737-25826829,
           25826987-25827064,25827158-25827224,25828780-25829111
          Length = 611

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 291 DNNEDYIASMVQEHYEDPYWYQIKLYYIQLEG 386
           DN  D I + V+  Y DPY YQ   +Y+ ++G
Sbjct: 305 DNKTDLICTTVRVKYVDPYEYQHN-HYLFIDG 335


>03_01_0006 +
           65675-65808,66385-66457,68290-68526,68648-68785,
           68871-69005,69131-69310,69495-69701,69821-69943,
           70240-70359,70758-70880,72067-72171,72254-72398,
           73443-73607,73669-73907,74452-74484,74977-75058,
           75200-75360,75739-75951,76789-76971,77051-77220,
           77375-77474
          Length = 1021

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 336 EDPYWYQIKLYYIQLEGLAAGYNDATKSMYEWLTVRDIL 452
           EDP WYQ+ + Y Q + + A Y     +  E + V ++L
Sbjct: 41  EDPAWYQVLIPY-QYQAILARYQVILDTYKEHIPVEEVL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,428,401
Number of Sequences: 37544
Number of extensions: 394792
Number of successful extensions: 1117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)