Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0520.Seq
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43321| Best HMM Match : Laminin_A (HMM E-Value=0.76)                40   0.003
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_36079| Best HMM Match : Peptidase_C48 (HMM E-Value=0.097)           31   0.98 
SB_50426| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_43321| Best HMM Match : Laminin_A (HMM E-Value=0.76)
          Length = 353

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +1

Query: 73  VAKATYTNEINNTGWAFLEL--HTSRDSTDEKQA-YSAGFLEGFLTRDLIWMHWQNVLKG 243
           VA   Y + IN TGWA L++   T  +  D+    Y+AG+LEG LT   I   ++NV  G
Sbjct: 46  VAYGLYQDNINTTGWAVLDVVSGTGVEPVDDVALMYAAGYLEGALTARHINYQYENVF-G 104

Query: 244 YCFK 255
             FK
Sbjct: 105 IFFK 108


>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 294 YLNNLQLVRIHQFFKAISFQNILPMHPYQISCEESFQKTS 175
           YLN LQLV + Q  K+ S  NI      Q   EES+Q  S
Sbjct: 5   YLNYLQLVNLKQLTKSASTPNIAAAVLKQCDIEESYQPHS 44


>SB_36079| Best HMM Match : Peptidase_C48 (HMM E-Value=0.097)
          Length = 796

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 225 AKCSERILL*KTDVCALIEDYLDN-NEDYIASMVQEHYEDPYWYQIKLYYIQL 380
           AKC ER    K DV   + D  D  NED + S  Q    D   Y I+  YI+L
Sbjct: 162 AKCMERDCS-KCDVEGSVNDMFDECNEDQLVSYYQWETSDDGIYNIRRQYIEL 213


>SB_50426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 111 CIIYF-VGVSCFRYVYIGYISVIVSH 37
           CII+F +G SC R  ++G ++V V H
Sbjct: 63  CIIFFLIGYSCARDGHVGSMNVAVKH 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,516,651
Number of Sequences: 59808
Number of extensions: 465474
Number of successful extensions: 1266
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)