Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0520.Seq
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83104-4|CAB05478.2| 582|Caenorhabditis elegans Hypothetical pr... 62 3e-10
AC025723-2|AAK29943.1| 581|Caenorhabditis elegans Hypothetical ... 58 9e-09
AL032626-2|CAA21539.1| 571|Caenorhabditis elegans Hypothetical ... 55 6e-08
AF099915-10|AAC68767.1| 149|Caenorhabditis elegans Hypothetical... 31 0.65
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 29 2.6
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 29 2.6
Z93391-4|CAC42353.1| 397|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical p... 28 8.0
>Z83104-4|CAB05478.2| 582|Caenorhabditis elegans Hypothetical
protein F09B12.3 protein.
Length = 582
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/59 (44%), Positives = 38/59 (64%)
Frame = +1
Query: 73 VAKATYTNEINNTGWAFLELHTSRDSTDEKQAYSAGFLEGFLTRDLIWMHWQNVLKGYC 249
VA A + N +N TGW FLE+ T + + QAYSAG+LEG L++ ++ H +N + YC
Sbjct: 81 VAVARWQNAVNTTGWTFLEVETKENYCPQLQAYSAGYLEGLLSKTVLTYHLKNAQEDYC 139
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +2
Query: 533 GEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLSS 712
G CSGL+K+ P +DL+ +QVT + +Q+MLR+ K+Y Y PG S SS
Sbjct: 235 GGKCSGLIKVAPGNADLFISQVTMSGFQNMLRVIKLYKFGY-----DRQFYPGYASSFSS 289
Query: 713 *PGL 724
PGL
Sbjct: 290 YPGL 293
>AC025723-2|AAK29943.1| 581|Caenorhabditis elegans Hypothetical
protein Y54F10AM.8 protein.
Length = 581
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +1
Query: 73 VAKATYTNEINNTGWAFLELHTSRDSTDEKQAYSAGFLEGFLTRDLIWMHWQNVLKGYC 249
VA Y+N++N TGW LE+ T + + QAY AG EG LTR I+ H++N ++ C
Sbjct: 72 VALGKYSNQVNTTGWGILEIETFASHSYDVQAYGAGVAEGELTRLQIYYHYRNTIETMC 130
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 267 CALIEDYLDNNEDYIASMVQEHYE-DPYWYQIKLYYIQLEGLAAGYNDATKSMYEWLTVR 443
C + YL N D++ S VQ + DP+W Q+ L + QL G+ Y+ + +
Sbjct: 137 CKRLYIYLQQNLDWMRSQVQANPPTDPFWRQVNLTFAQLTGIYDAYSKRNLTPEIGFDLH 196
Query: 444 DILWINMLGDLDDL 485
I + + GD+ DL
Sbjct: 197 PIYMMQLAGDMFDL 210
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 533 GEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLSS 712
G CSG VKL P D++ A V+ +S M R+ K+Y Y + +PG ++ S
Sbjct: 226 GGRCSGFVKLAPGNKDMFMAHVSMSSLSWMQRVLKIYKFGYDVNE-----VPGHIVTFSG 280
Query: 713 *PGL 724
PG+
Sbjct: 281 YPGV 284
>AL032626-2|CAA21539.1| 571|Caenorhabditis elegans Hypothetical
protein Y37D8A.2 protein.
Length = 571
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 73 VAKATYTNEINNTGWAFLELHT-SRDSTDEKQAYSAGFLEGFLTRDLIWMHWQNVLKGYC 249
+A A + +E+N TGWAFLE+ S Q Y+AGF EG TR LI +H N + GYC
Sbjct: 52 LATAYFHDEVNQTGWAFLEVDVISPKIPHYLQGYAAGFAEGRATRHLIDLHIINTVNGYC 111
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 509 ETPEGLMFGE-HCSGLVKLLPDLSDLYTAQVTWNSYQSMLRIQKMY 643
E P+ + G HCS LVKLLP D+ + VTW+SY +MLRI K Y
Sbjct: 200 ENPKKVFSGPGHCSALVKLLPKNEDILFSHVTWSSYGTMLRINKKY 245
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 267 CALIEDYLDNNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYND--ATKSMYEWLTV 440
C + +++ +N ++ ++E+ ED YW Q+ L QL GL GY + + ++ + V
Sbjct: 118 CDELGEFMVDNLKWMEQEIRENPEDEYWQQVNLTVNQLFGLIHGYENQLGAEIDFKQIAV 177
Query: 441 RDILWINMLGDLDDLAFALSMPRRRPRA*CSG 536
I I + GDL+DLA P P+ SG
Sbjct: 178 HPIFMIQIAGDLEDLAMKFKKP-ENPKKVFSG 208
>AF099915-10|AAC68767.1| 149|Caenorhabditis elegans Hypothetical
protein E02H9.1 protein.
Length = 149
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 482 PGVRAVHAEETPEGLMFGEHCSGLVKLLPDLS-DLY--TAQVTWNSYQSMLRIQKMYVMN 652
P + V AEET +GL FG H + ++ D + D Y + +V W Y + Y +
Sbjct: 68 PHLYKVDAEETDDGLDFGRHFEIYMLIIHDCNPDRYVKSLKVDWGKYHIDIEFVTFYALK 127
Query: 653 Y 655
+
Sbjct: 128 F 128
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 255 KTDVCALIEDYLDNNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYNDATKSMYEWL 434
K D+ A D + D + V+ HY+DP+W Y++ L +KS+ ++
Sbjct: 521 KLDIHAGGFDLKFPHHDNEIAQVEAHYDDPHWVN---YFLHCGTLRIQGMKMSKSLKNFI 577
Query: 435 TVRDIL 452
T+R L
Sbjct: 578 TIRKAL 583
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 255 KTDVCALIEDYLDNNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYNDATKSMYEWL 434
K D+ A D + D + V+ HY+DP+W Y++ L +KS+ ++
Sbjct: 520 KLDIHAGGFDLKFPHHDNEIAQVEAHYDDPHWVN---YFLHCGTLRIQGMKMSKSLKNFI 576
Query: 435 TVRDIL 452
T+R L
Sbjct: 577 TIRKAL 582
>Z93391-4|CAC42353.1| 397|Caenorhabditis elegans Hypothetical
protein W04G5.10 protein.
Length = 397
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 573 RSGSSFTSPEQCSPNIRPSGVSSAWTARTPGRPSHPAC 460
R G++ + PE C+P + + S W RPS AC
Sbjct: 339 RKGNTLSEPEHCAPKMY-YFMKSCWNLIPEERPSFTAC 375
>Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 64 DVYVAKATYTNEINNTGWAFLELHTS 141
+V + ++N +NN W FL++H S
Sbjct: 144 EVCAVDSEHSNNLNNDAWRFLQVHRS 169
>Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 64 DVYVAKATYTNEINNTGWAFLELHTS 141
+V + ++N +NN W FL++H S
Sbjct: 144 EVCAVDSEHSNNLNNDAWRFLQVHRS 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,074
Number of Sequences: 27780
Number of extensions: 332704
Number of successful extensions: 1001
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -